Bioconductor Celegans

Showing : celegans • reset

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467

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Enzo.Scifo • 0

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946

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BSgenome Celegans

updated 2.0 years ago by Hervé Pagès 16k • written 2.0 years ago by Tsung-Han • 0

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1.4k

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biomaRt bioconductor celegans annotation

updated 6.3 years ago by Mike Smith ★ 6.5k • written 6.3 years ago by clarisbaby • 0

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935

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celegans Biostrings celegans Biostrings

updated 15.4 years ago by Hervé Pagès 16k • written 15.4 years ago by Elizabeth Purdom ▴ 210

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966

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Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans

updated 14.2 years ago by Sean Davis 21k • written 14.2 years ago by Paul Shannon ★ 1.1k

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744

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celegans affy convert celegans affy convert

updated 13.6 years ago by Marc Carlson ★ 7.2k • written 13.6 years ago by Julie Zhu ★ 4.3k

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1.6k

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Gviz celegans

updated 6.3 years ago by Robert Ivanek ▴ 730 • written 6.3 years ago by alex.gos90 ▴ 10

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690

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Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy

20.6 years ago James W. MacDonald 65k

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846

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celegans celegans

17.1 years ago Gordon Smyth 50k

9 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k

> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…

Comment: minfi::read.metharray.exp by Basti ▴ 780

This is indeed correct now !

Comment: get BM error by Fara • 0

Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529

Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Votes

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

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Scholar to ATpoint ★ 4.0k