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cellHTS2
•
reset
0
votes
5
replies
1.9k
views
Question regarding cellhts2 output
Normalization
Visualization
PROcess
cellHTS2
ASSIGN
Normalization
Visualization
PROcess
11.1 years ago • updated 11.0 years ago
maziz@tgen.org
▴ 70
1
vote
5
replies
1.8k
views
B-Score problems with CellHTS2
B-Score
cellhts2
normalization
updated 8.7 years ago by
Joseph Barry
▴ 160 • written 8.7 years ago by
zmorehouse
• 0
0
votes
8
replies
1.7k
views
Failed to annotated my wells
cellhts2
updated 8.7 years ago by
Joseph Barry
▴ 160 • written 8.8 years ago by
wstoo1
• 0
0
votes
1
reply
1.6k
views
cellHTS2 : negative values after normalization
cellhts2
updated 8.7 years ago by
Joseph Barry
▴ 160 • written 8.7 years ago by
User34591
• 0
0
votes
2
replies
1.4k
views
Question regarding cellhts2 output
Normalization
cellHTS2
ASSIGN
Normalization
cellHTS2
ASSIGN
11.8 years ago • updated 11.7 years ago
maziz@tgen.org
▴ 70
0
votes
2
replies
1.3k
views
cellHTS2 error in writeReport
cellHTS2
cellHTS2
updated 15.9 years ago by
Wolfgang Huber
★ 13k • written 15.9 years ago by
Steve Taylor
▴ 280
0
votes
4
replies
1.3k
views
Question regarding cellhts2 output
Normalization
cellHTS2
Normalization
cellHTS2
updated 11.9 years ago by
maziz@tgen.org
▴ 70 • written 11.9 years ago by
Joseph Barry
▴ 160
0
votes
1
reply
1.3k
views
CellHTS Replicates Missing
Cancer
cellHTS2
Cancer
cellHTS2
updated 14.8 years ago by
Florian Hahne
▴ 540 • written 14.8 years ago by
Becky Saunders
▴ 40
0
votes
2
replies
1.3k
views
cellHTS2 variance by plate calculation?
Normalization
GO
cellHTS2
Normalization
GO
cellHTS2
updated 12.4 years ago by
Joseph Barry
▴ 160 • written 12.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
[Fwd: batch info for cellHTS]
GO
Cancer
cellHTS
cellHTS2
GO
Cancer
cellHTS
cellHTS2
15.5 years ago
Florian Hahne
▴ 540
0
votes
0
replies
1.2k
views
BioConductor Developer Workshop Lausanne 2008 Info
SNP
Annotation
annaffy
AnnBuilder
biomaRt
cellHTS2
SNP
Annotation
annaffy
AnnBuilder
16.2 years ago
Darlene Goldstein
▴ 230
0
votes
3
replies
1.2k
views
cellHTS2 writeReport error
cellHTS2
cellHTS2
updated 15.8 years ago by
rclement
▴ 20 • written 15.8 years ago by
Becky Saunders
▴ 40
2
votes
3
replies
1.1k
views
cellHTS2 importa and analysing data from chemical compound screening
cellhts2
cheminformatics
updated 7.4 years ago by
Joseph Barry
▴ 160 • written 7.4 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.1k
views
Bioconductor package cellHTS2
cellHTS
cellHTS2
cellHTS
cellHTS2
11.9 years ago
Joseph Barry
▴ 160
0
votes
1
reply
1.1k
views
[cellHTS2] error message with DualChannelScreen on example dataset
cellHTS2
cellHTS2
updated 11.5 years ago by
Wolfgang Huber
★ 13k • written 11.5 years ago by
Vipin T Sreedharan
▴ 10
0
votes
3
replies
1.1k
views
cellHTS2 configure error
cellHTS2
updated 8.1 years ago by
Joseph Barry
▴ 160 • written 8.1 years ago by
eduardo.andres.leon
• 0
0
votes
2
replies
1.0k
views
cellHTS2 and channelNames
cellHTS
cellHTS2
cellHTS
cellHTS2
updated 11.0 years ago by
Wolfgang Huber
★ 13k • written 11.0 years ago by
Mark Dane
▴ 40
0
votes
1
reply
1.0k
views
Definition of the CellHTS2 normalizePlates parameter scale
Normalization
cellHTS2
Normalization
cellHTS2
updated 15.6 years ago by
Elin Axelsson
▴ 60 • written 15.6 years ago by
c.lieftink@nki.nl
▴ 40
0
votes
0
replies
1.0k
views
Definition of the CellHTS2 normalizePlates parameter scale
Normalization
cellHTS2
Normalization
cellHTS2
15.6 years ago
c.lieftink@nki.nl
▴ 40
0
votes
1
reply
1.0k
views
The issue with Report Pearson instead of Spearman
cellHTS2
cellHTS2
updated 13.7 years ago by
Wolfgang Huber
★ 13k • written 13.7 years ago by
Ning
▴ 80
0
votes
1
reply
1.0k
views
cellHTS readPlateList funciton cannot find files
cellHTS2
cellHTS2
14.8 years ago
Ian Sudbery
▴ 50
0
votes
1
reply
1000
views
Normalization
Normalization
cellHTS2
Normalization
cellHTS2
updated 13.8 years ago by
Wolfgang Huber
★ 13k • written 13.8 years ago by
Ning
▴ 80
0
votes
1
reply
993
views
Web CellHTS2 data upload
cellhts2
upload
missing data
updated 8.2 years ago by
Joseph Barry
▴ 160 • written 8.2 years ago by
zmorehouse
• 0
0
votes
0
replies
930
views
Error in readPlateList
cellhts2
error
6.8 years ago
sil1
• 0
0
votes
1
reply
923
views
cellHTS2 - normalization with BScore (performance
cellHTS2
Normalization
updated 2.4 years ago by
Wolfgang Huber
★ 13k • written 2.4 years ago by
liebi83
• 0
0
votes
3
replies
918
views
cellHTS2: help with ConfFile (convertWellCoordinates) function
cellHTS2
cellHTS2
updated 16.2 years ago by
Wolfgang Huber
★ 13k • written 16.2 years ago by
dunicadj@tcd.ie
▴ 10
0
votes
0
replies
907
views
Navigating data in the cellHTS2 object
cellHTS2
cellHTS2
14.8 years ago
Ian Sudbery
▴ 50
0
votes
0
replies
903
views
help with defining batch slot in cellHTS2
cellHTS
cellHTS2
cellHTS
cellHTS2
15.5 years ago
yan zhou
▴ 80
0
votes
0
replies
877
views
batch info for cellHTS2
Normalization
cellHTS2
Normalization
cellHTS2
14.5 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
870
views
[BiozzDzC] Normalizationza
Normalization
cellHTS2
Normalization
cellHTS2
13.8 years ago
casey frankenberger
▴ 10
0
votes
0
replies
824
views
cellHTS2 - 2 channel batch analysis
cellHTS2
cellHTS2
15.5 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
822
views
Specifying wells in normalization for cellHTS2
Normalization
cellHTS2
Normalization
cellHTS2
updated 16.4 years ago by
ligia@ebi.ac.uk
▴ 50 • written 16.4 years ago by
Steve Taylor
▴ 100
0
votes
0
replies
759
views
cellHTS2 - 2 channel batch analysis
cellHTS2
cellHTS2
15.6 years ago
Steve Taylor
▴ 280
0
votes
0
replies
442
views
Formatting cellHTS2 experiment
cellHTS2
2.6 years ago
yura.grabovska
▴ 30
34 results • Page
1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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