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Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
by
Bob
▴
10
Thanks for the prompt answer! I looked into the "original ssGSEA R-implementation" ([https://github.com/GSEA-MSigDB/ssGSEA-gpmodule][1]), u…
Comment: RNASeq Time Course Question
by
jihoon.kim.1495
▴
10
I see. You'd mean clustering using only the right 5 columns (in the above example), right?
Comment: RNASeq Time Course Question
by
Michael Love
42k
Yes. If you wanted to focus on differences, you could cluster on the subset of coefficients representing differences (interactions).
Comment: RNASeq Time Course Question
by
jihoon.kim.1495
▴
10
Thanks for the clarification.
With regards to your last comment about the clustering by the coefficients/log2fold changes, I wanted to cl…
Answer: RNASeq Time Course Question
by
Michael Love
42k
> I am comparing Wildtype Day7 VS Condition Day 7, or is there a different comparison being made?
yes.
Remember, from the workflow, we sa…
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