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cellmix
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Extracting results from a DSA fit to expression data with only a gene markers list
cellmix
6.5 years ago
nrubinstein
• 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.3 years ago
gabor.halasz
• 0
1
vote
1
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1.9k
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CellMix compare results to CellCODE
cellmix
cellcode
updated 8.0 years ago by
Steve Lianoglou
★ 13k • written 8.0 years ago by
christopher.clarskon15
▴ 20
0
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0
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854
views
Coefmap plot without the sorting
coefmap
cellmix
8.3 years ago
thrabe
• 0
0
votes
0
replies
969
views
basismarkermap scaling fails for large data
Cellmix
8.3 years ago
thrabe
• 0
0
votes
1
reply
861
views
Access MarkerList attribute
cellmix
8.3 years ago
thrabe
• 0
0
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0
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1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
8.9 years ago
carleshf
▴ 10
7 results • Page
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Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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