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cellmix
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Extracting results from a DSA fit to expression data with only a gene markers list
cellmix
6.5 years ago
nrubinstein
• 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.3 years ago
gabor.halasz
• 0
1
vote
1
reply
1.9k
views
CellMix compare results to CellCODE
cellmix
cellcode
updated 8.0 years ago by
Steve Lianoglou
★ 13k • written 8.0 years ago by
christopher.clarskon15
▴ 20
0
votes
0
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854
views
Coefmap plot without the sorting
coefmap
cellmix
8.3 years ago
thrabe
• 0
0
votes
0
replies
970
views
basismarkermap scaling fails for large data
Cellmix
8.3 years ago
thrabe
• 0
0
votes
1
reply
861
views
Access MarkerList attribute
cellmix
8.3 years ago
thrabe
• 0
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
8.9 years ago
carleshf
▴ 10
7 results • Page
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Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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