updated 23 months ago by
hw538
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written 23 months ago by
bony.dekumar
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Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
by
James W. MacDonald
67k
I would use the mapper I note above, and build your own `OrgDb`, then do the GO analysis directly.
```
> library(AnnotationForge)
> option…
Comment: Trying to convert ATACseq annotations of non-model species into human orthologs,
by
James W. MacDonald
67k
There's already an `OrgDb` for this species on the AnnotationHub that hypothetically would be ideal, but there are almost no GO mappings, s…
Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
by
James W. MacDonald
67k
It's probably not going to work that well using that species, but you can give it a shot. Note that you don't appear to have any good IDs. …
Comment: Trying to convert ATACseq annotations of non-model species into human orthologs,
by
Guido Hooiveld
★
4.1k
Not an answer to your question, but it seems the content of the column `Entrez ID` are actually no *entrez ids* but rather *aliases*... Ent…
Answer: ChIPpeakAnno can not load data
by
hukai916
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10
`ChIPpeakAnno` stores several example files under its `extdata` directory for demonstration purposes. These files can be found with the `sy…
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