Showing : cgh • reset
1
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1.9k
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Columns used by read.maimages for Agilent arrays
Annotation CGH limma
10.0 years ago • updated 4.8 years ago Gordon Smyth 46k
2
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3
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843
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read.maimages
Annotation CGH limma Annotation CGH limma
updated 4.8 years ago by 46k • written 10.1 years ago by ★ 1.5k
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495
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How to combine CGHcall objects
cghcall r cgh copy number
5.2 years ago kitcurtius • 0
5
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3
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1.0k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 5.4 years ago by 570 • written 6.0 years ago by 21k
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0
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623
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problem in doing aCGH+SNP analysis
cgh
7.3 years ago kajayh • 0
0
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1
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1.2k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 8.0 years ago by 21k • written 8.0 years ago by ★ 12k
0
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analyses of CGH data
Microarray CGH Microarray CGH
8.8 years ago Isha Pandey Phd Scholar BITS Pilani Cam… ▴ 10
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1.1k
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Chr Info for array CGH - agilent 60K
CGH CGH
9.0 years ago Cian Murphy ▴ 40
0
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0
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618
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snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
9.2 years ago Juliet Hannah ▴ 360
0
votes
1
reply
906
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CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 10.6 years ago by 25k • written 10.6 years ago by ▴ 280
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1
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1.1k
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CGHweb and cghFLasso
CGH CGH
updated 10.9 years ago by 6.6k • written 10.9 years ago by ▴ 80
0
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3
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2.0k
views
Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 11.4 years ago by ▴ 750 • written 11.4 years ago by ▴ 280
0
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0
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1.3k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
11.8 years ago Paul Shannon ★ 1.1k
0
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0
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620
views
how to import Agilent CGH custom design xml file into limma
Normalization CGH probe limma Normalization CGH probe limma
11.8 years ago Sean Davis 21k
0
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1
reply
1.3k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 11.8 years ago by 21k • written 11.8 years ago by ▴ 110
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2
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903
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memory limit
CGH trigger CGH trigger
updated 11.9 years ago by 13k • written 11.9 years ago by ▴ 100
0
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1
reply
990
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aCGH...'Genomic events'
CGH CGH
updated 11.9 years ago by 21k • written 11.9 years ago by ▴ 10
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1
reply
1.0k
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limma Agilent Normalization
Normalization CGH Normalization CGH
updated 12.2 years ago by 21k • written 12.2 years ago by ▴ 100
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619
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CGHcall problem
CGH CGHcall CGH CGHcall
12.3 years ago Erik Dassi ▴ 10
0
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2
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920
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Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 12.3 years ago by ▴ 450 • written 12.3 years ago by ▴ 80
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7
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951
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CGH analysis without genome positions
CGH CGH
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 70
0
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1
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1.1k
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CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 12.6 years ago by ★ 2.9k • written 12.6 years ago by ★ 1.1k
0
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2
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Calling genes present or absent in CGH data
CGH limma CGH limma
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 70
0
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0
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914
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
12.8 years ago Patrick Aboyoun 1.6k
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764
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problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
12.9 years ago Dick Beyer ★ 1.4k
0
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1
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659
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rtracklayer browserView
CGH rtracklayer CGH rtracklayer
13.0 years ago Giulio Di Giovanni ▴ 540
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0
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767
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
13.0 years ago Wolfgang RAFFELSBERGER ▴ 140
0
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1
reply
630
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 10
0
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0
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571
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error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
13.3 years ago Wolfgang Raffelsberger ▴ 160
0
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1
reply
585
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How to run bioHMM on Affymetrix data?
CGH CGH
updated 13.3 years ago by ▴ 550 • written 13.4 years ago by ▴ 30
0
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2
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707
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How to display chromosome rapresentation ?
CGH impute CGH impute
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 540
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1
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770
views
Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ▴ 190
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0
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696
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
13.5 years ago Daren Tan ▴ 190
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1
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1.0k
views
A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 13.7 years ago by ★ 2.4k • written 13.7 years ago by ▴ 70
0
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1
reply
514
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CGH analysis in non-model organism
CGH CGH
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 30
0
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5
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731
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quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 110
0
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0
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1.4k
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Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
13.9 years ago Florian Markowetz ▴ 20
0
votes
1
reply
669
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 13.9 years ago by ▴ 340 • written 13.9 years ago by ▴ 340
0
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1
reply
826
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 13.9 years ago by 21k • written 13.9 years ago by ★ 1.9k
0
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9
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981
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
14.1 years ago Oscar Rueda ▴ 60
0
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0
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518
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snapCGH package - processCGH
CGH CGH
14.1 years ago Henrique Proença ▴ 80
0
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5
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738
views
gains and losses via mode shifting
CGH CGH
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 830
0
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2
replies
718
views
cross species CGH Nimblegene arrays
CGH CGH
updated 14.3 years ago by ▴ 70 • written 14.3 years ago by ▴ 30
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0
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567
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Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
14.3 years ago mb23 ▴ 30
0
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2
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515
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 30
0
votes
0
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633
views
New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
14.3 years ago Michael Lawrence ▴ 620
0
votes
2
replies
582
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 14.4 years ago by ▴ 340 • written 14.4 years ago by 21k
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0
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448
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
14.4 years ago Sean Davis 21k
0
votes
1
reply
701
views
array CGH - raw data analysis
CGH CGH
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 500
0
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0
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973
views
JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
14.5 years ago Robert Castelo ★ 2.9k
50 results • Page 1 of 1
Recent ...
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Comment: conditional command within GRanges by Marcel Ramos 570
I'm not sure I understand what you're trying to do. `if` should evaluate a scalar, it looks like you're using a vector. Perhaps use `ifelse…
Comment: An ESR essay about software design, and how it applies to Bioconductor by Gary • 0
It's relevant for me, thank you for the information!
Comment: An ESR essay about software design, and how it applies to Bioconductor by Gary • 0
Thank you for sharing!
Comment: conditional command within GRanges by Basti ▴ 400
I can't reproduce your issue because you did not provided an example of your dataset (example with `dput(head(data1))`, but in the first ca…
Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120
That sounds like you have the wrong version of the annotation compared to which version you used for the quantification?
Votes
Bioconductor teaching week
Answer: mapToAlignments_issue
Comment: conditional command within GRanges
Bioconductor teaching week
Answer: WHat is the difference between DEG and TopVarGenes in DESEq2?
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