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cgh
•
reset
0
votes
9
replies
1.7k
views
gains and losses via mode shifting
Cancer
CGH
Cancer
CGH
15.8 years ago • updated 15.7 years ago
Oscar Rueda
▴ 60
0
votes
4
replies
1.1k
views
create CNA object in DNAcopy package with agilent data
CGH
CGH
updated 16.6 years ago by
Sean Davis
21k • written 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
8
replies
2.0k
views
segmentation aCGH data
Normalization
CGH
probe
limma
DNAcopy
snapCGH
Normalization
CGH
probe
limma
DNAcopy
16.5 years ago
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP
CGH
affy
GLAD
snapCGH
SNP
CGH
affy
GLAD
snapCGH
updated 16.5 years ago by
Rob Scharpf
▴ 250 • written 16.5 years ago by
Yu Chuan Tai
▴ 440
0
votes
8
replies
1.6k
views
annotation files for agilent: a bit off-topic
Annotation
CGH
Annotation
CGH
updated 16.7 years ago by
Gaj Stan BIGCAT
▴ 100 • written 16.7 years ago by
Weiwei Shi
★ 1.2k
0
votes
5
replies
1.5k
views
from BAC name to list of genes in that BAC
CGH
BAC
CGH
BAC
updated 17.2 years ago by
Hilmar Berger
▴ 60 • written 17.2 years ago by
Federico Abascal
▴ 90
0
votes
5
replies
1.6k
views
understanding GOstats p-value
Annotation
GO
Cancer
CGH
GOstats
Annotation
GO
Cancer
CGH
GOstats
updated 16.2 years ago by
Charles Berry
▴ 290 • written 16.2 years ago by
Janet Young
▴ 740
5
votes
3
replies
1.5k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 7.0 years ago by
Marcel Ramos
690 • written 7.6 years ago by
Sean Davis
21k
0
votes
2
replies
1.3k
views
Calling genes present or absent in CGH data
CGH
limma
CGH
limma
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
adam_pgsql
▴ 70
0
votes
3
replies
2.4k
views
Script to save plots in Pdf format ( DNAcopy)
CGH
PROcess
CGH
PROcess
updated 13.0 years ago by
Thomas Hampton
▴ 750 • written 13.0 years ago by
nac
▴ 280
0
votes
3
replies
978
views
Scripts to handle array CGH data files from NimbleGen
aCGH
Cancer
Breast
CGH
aCGH
aCGH
Cancer
Breast
CGH
aCGH
updated 17.8 years ago by
Todd Richmond
▴ 140 • written 17.8 years ago by
Steven McKinney
▴ 310
0
votes
5
replies
1.2k
views
gains and losses via mode shifting
CGH
CGH
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Benjamin Otto
▴ 830
0
votes
2
replies
1.0k
views
cross species CGH Nimblegene arrays
CGH
CGH
updated 15.9 years ago by
Alicia Oshlack
▴ 70 • written 15.9 years ago by
mb23
▴ 30
0
votes
2
replies
1.1k
views
How to display chromosome rapresentation ?
CGH
impute
CGH
impute
updated 15.0 years ago by
Sean Davis
21k • written 15.0 years ago by
Giulio Di Giovanni
▴ 540
0
votes
7
replies
1.6k
views
processCGH in snapCGH package
CGH
snapCGH
CGH
snapCGH
updated 16.5 years ago by
Sean Davis
21k • written 16.5 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
7
replies
1.4k
views
CGH analysis without genome positions
CGH
CGH
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
adam_pgsql
▴ 70
0
votes
1
reply
975
views
Where to download annotation package for Agilent human CGH 44B
Annotation
CGH
Annotation
CGH
updated 15.1 years ago by
Marc Carlson
★ 7.2k • written 15.1 years ago by
Daren Tan
▴ 190
0
votes
1
reply
1.4k
views
Bioconductor 1.4 released
Proteomics
Annotation
Normalization
GO
Cancer
CGH
pamr
gcrma
gpls
affyPLM
webbioc
bim
updated 19.9 years ago by
Wolfgang Huber
★ 13k • written 19.9 years ago by
A.J. Rossini
▴ 810
0
votes
1
reply
780
views
error message from GLAD
CGH
GLAD
CGH
GLAD
updated 18.6 years ago by
Philippe Hupé
▴ 20 • written 18.6 years ago by
Irene Li
▴ 30
0
votes
3
replies
1.2k
views
[JOB] Bioinformatics positions at NCI
SNP
Cancer
CGH
affy
SNP
Cancer
CGH
affy
updated 17.9 years ago by
E Motakis, Mathematics
▴ 190 • written 17.9 years ago by
Sean Davis
21k
0
votes
1
reply
973
views
Scripts to handle array CGH data files from NimbleGen
CGH
tilingArray
CGH
tilingArray
updated 17.6 years ago by
ma3mls@bath.ac.uk
▴ 40 • written 17.6 years ago by
Todd Richmond
▴ 140
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH
snapCGH
CGH
snapCGH
updated 17.5 years ago by
Steven McKinney
▴ 310 • written 17.5 years ago by
rdesprat
▴ 30
0
votes
1
reply
689
views
aCGH across samples
aCGH
Cancer
CGH
aCGH
aCGH
Cancer
CGH
aCGH
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH
CGH
multtest
impute
aCGH
oligo
aCGH
CGH
multtest
impute
aCGH
oligo
updated 17.2 years ago by
Sean Davis
21k • written 17.2 years ago by
Betty Gilbert
▴ 50
0
votes
1
reply
1.2k
views
CGH analysis warning messages
Cancer
CGH
snapCGH
Cancer
CGH
snapCGH
updated 16.7 years ago by
Ian Roberts
▴ 70 • written 16.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
806
views
array CGH software
CGH
CGH
written 16.7 years ago by
Igor Wojciechowski
▴ 10
0
votes
1
reply
1.1k
views
DNAcopy package, craeting CNA object
CGH
marray
DNAcopy
CGH
marray
DNAcopy
updated 16.6 years ago by
Sean Davis
21k • written 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
4
replies
1.2k
views
Agilent CGH data
CGH
arrayQuality
marray
CGH
arrayQuality
marray
updated 16.5 years ago by
Sean Davis
21k • written 16.5 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 16.5 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 16.5 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP
Microarray
SAGE
Annotation
Bayesian
Regression
GUI
CGH
hgu95av2
graph
Rgraphviz
SNP
16.5 years ago
Hervé Pagès
16k
0
votes
1
reply
1.0k
views
array CGH - raw data analysis
CGH
CGH
updated 16.1 years ago by
Sean Davis
21k • written 16.1 years ago by
João Fadista
▴ 500
0
votes
2
replies
844
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH
CGH
updated 16.0 years ago by
Abhilash Venu
▴ 340 • written 16.0 years ago by
Sean Davis
21k
0
votes
2
replies
864
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH
CGH
updated 15.9 years ago by
Sean Davis
21k • written 15.9 years ago by
mb23
▴ 30
0
votes
1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation
Cancer
CGH
Annotation
Cancer
CGH
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
961
views
normexp error (while using snapCGH)
CGH
snapCGH
CGH
snapCGH
updated 15.5 years ago by
Artur Veloso
▴ 340 • written 15.5 years ago by
Abhilash Venu
▴ 340
0
votes
5
replies
1.2k
views
quality assessment and preprocessing for tiling array-based CGH data
CGH
probe
CGH
probe
updated 15.4 years ago by
Sean Davis
21k • written 15.4 years ago by
Leon Yee
▴ 110
0
votes
1
reply
726
views
CGH analysis in non-model organism
CGH
CGH
updated 15.3 years ago by
Sean Davis
21k • written 15.3 years ago by
Mingkwan Nipitwattanaphon
▴ 30
0
votes
1
reply
1.3k
views
A CGH platform question
SNP
Genetics
Coverage
CGH
affy
SNP
Genetics
Coverage
CGH
affy
updated 15.3 years ago by
Henrik Bengtsson
★ 2.4k • written 15.3 years ago by
Johan Lindberg
▴ 70
0
votes
1
reply
787
views
How to run bioHMM on Affymetrix data?
CGH
CGH
updated 15.0 years ago by
Oosting, J. PATH
▴ 550 • written 15.0 years ago by
Stacey Burrows
▴ 30
0
votes
1
reply
901
views
NimbleGen HG18 CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
updated 14.7 years ago by
Sean Davis
21k • written 14.7 years ago by
Abcis
▴ 10
0
votes
1
reply
892
views
rtracklayer browserView
CGH
rtracklayer
CGH
rtracklayer
14.6 years ago
Giulio Di Giovanni
▴ 540
0
votes
1
reply
1.5k
views
CNV analysis with cghMCR/CNTools
GO
CGH
hgu133a
hgu95av2
GO
CGH
hgu133a
hgu95av2
updated 14.2 years ago by
John Zhang
★ 2.9k • written 14.2 years ago by
Tim Smith
★ 1.1k
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH
snapCGH
Ringo
CGH
snapCGH
Ringo
updated 13.9 years ago by
Joern Toedling
▴ 450 • written 13.9 years ago by
Chris Fenton
▴ 80
0
votes
1
reply
1.3k
views
limma Agilent Normalization
Normalization
CGH
Normalization
CGH
updated 13.8 years ago by
Sean Davis
21k • written 13.8 years ago by
Noemi Andor
▴ 100
0
votes
1
reply
1.4k
views
aCGH...'Genomic events'
CGH
CGH
updated 13.6 years ago by
Sean Davis
21k • written 13.6 years ago by
BTIS Department
▴ 10
0
votes
2
replies
1.2k
views
memory limit
CGH
trigger
CGH
trigger
updated 13.5 years ago by
Steve Lianoglou
★ 13k • written 13.5 years ago by
Noemi Andor
▴ 100
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH
CGH
probe
aCGH
snapCGH
aCGH
CGH
probe
aCGH
snapCGH
updated 13.4 years ago by
Sean Davis
21k • written 13.4 years ago by
Jarek Bryk
▴ 110
0
votes
1
reply
1.4k
views
CGHweb and cghFLasso
CGH
CGH
updated 12.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.5 years ago by
Chris Fenton
▴ 80
0
votes
1
reply
1.2k
views
CNTools error message
CGH
probe
DNAcopy
CGH
probe
DNAcopy
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
nac
▴ 280
2
votes
3
replies
1.2k
views
read.maimages
Annotation
CGH
limma
Annotation
CGH
limma
updated 6.5 years ago by
Gordon Smyth
50k • written 11.7 years ago by
Assa Yeroslaviz
★ 1.5k
50 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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