Showing : cgh • reset
0
votes
9
replies
1.7k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
15.8 years ago Oscar Rueda ▴ 60
0
votes
4
replies
1.1k
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
8
replies
2.0k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.5 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
votes
8
replies
1.6k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 16.8 years ago by ▴ 100 • written 16.8 years ago by ★ 1.2k
0
votes
5
replies
1.6k
views
from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 17.3 years ago by ▴ 60 • written 17.3 years ago by ▴ 90
0
votes
5
replies
1.6k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 16.3 years ago by ▴ 290 • written 16.3 years ago by ▴ 740
5
votes
3
replies
1.6k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.0 years ago by 690 • written 7.7 years ago by 21k
0
votes
2
replies
1.3k
views
Calling genes present or absent in CGH data
CGH limma CGH limma
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 70
0
votes
3
replies
2.4k
views
Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 13.0 years ago by ▴ 750 • written 13.0 years ago by ▴ 280
0
votes
3
replies
997
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
0
votes
5
replies
1.2k
views
gains and losses via mode shifting
CGH CGH
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 830
0
votes
2
replies
1.0k
views
cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
0
votes
2
replies
1.1k
views
How to display chromosome rapresentation ?
CGH impute CGH impute
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 540
0
votes
7
replies
1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
replies
1.4k
views
CGH analysis without genome positions
CGH CGH
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 70
0
votes
1
reply
981
views
Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 190
0
votes
1
reply
1.4k
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 19.9 years ago by ★ 13k • written 19.9 years ago by ▴ 810
0
votes
1
reply
785
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.7 years ago by ▴ 20 • written 18.7 years ago by ▴ 30
0
votes
3
replies
1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 17.9 years ago by ▴ 190 • written 17.9 years ago by 21k
0
votes
1
reply
985
views
Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.6 years ago by ▴ 40 • written 17.6 years ago by ▴ 140
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.5 years ago by ▴ 310 • written 17.5 years ago by ▴ 30
0
votes
1
reply
701
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
0
votes
2
replies
1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
votes
1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.8 years ago by ▴ 70 • written 16.8 years ago by ★ 1.9k
0
votes
1
reply
814
views
array CGH software
CGH CGH
written 16.7 years ago by ▴ 10
0
votes
1
reply
1.1k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
4
replies
1.2k
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.5 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.5 years ago Hervé Pagès 16k
0
votes
1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 500
0
votes
2
replies
849
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.0 years ago by ▴ 340 • written 16.1 years ago by 21k
0
votes
2
replies
878
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 1.9k
0
votes
1
reply
969
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
votes
5
replies
1.2k
views
quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 110
0
votes
1
reply
733
views
CGH analysis in non-model organism
CGH CGH
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 30
0
votes
1
reply
1.3k
views
A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 15.3 years ago by ★ 2.4k • written 15.3 years ago by ▴ 70
0
votes
1
reply
806
views
How to run bioHMM on Affymetrix data?
CGH CGH
updated 15.0 years ago by ▴ 550 • written 15.0 years ago by ▴ 30
0
votes
1
reply
909
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 10
0
votes
1
reply
901
views
rtracklayer browserView
CGH rtracklayer CGH rtracklayer
14.6 years ago Giulio Di Giovanni ▴ 540
0
votes
1
reply
1.5k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 14.2 years ago by ★ 2.9k • written 14.2 years ago by ★ 1.1k
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.0 years ago by ▴ 450 • written 14.0 years ago by ▴ 80
0
votes
1
reply
1.3k
views
limma Agilent Normalization
Normalization CGH Normalization CGH
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 100
0
votes
1
reply
1.4k
views
aCGH...'Genomic events'
CGH CGH
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 10
0
votes
2
replies
1.2k
views
memory limit
CGH trigger CGH trigger
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 100
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 110
0
votes
1
reply
1.4k
views
CGHweb and cghFLasso
CGH CGH
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 80
0
votes
1
reply
1.3k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 280
2
votes
3
replies
1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.5 years ago by 50k • written 11.7 years ago by ★ 1.5k
50 results • Page 1 of 1
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Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
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Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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