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cgh
•
reset
0
votes
1
reply
814
views
array CGH software
CGH
CGH
written 16.7 years ago by
Igor Wojciechowski
▴ 10
1
vote
2
replies
2.3k
views
Columns used by read.maimages for Agilent arrays
Annotation
CGH
limma
11.7 years ago • updated 6.5 years ago
Gordon Smyth
50k
2
votes
3
replies
1.2k
views
read.maimages
Annotation
CGH
limma
Annotation
CGH
limma
updated 6.5 years ago by
Gordon Smyth
50k • written 11.7 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
751
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
6.9 years ago
kitcurtius
• 0
5
votes
3
replies
1.6k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 7.0 years ago by
Marcel Ramos
690 • written 7.7 years ago by
Sean Davis
21k
0
votes
0
replies
822
views
problem in doing aCGH+SNP analysis
cgh
9.0 years ago
kajayh
• 0
0
votes
1
reply
1.5k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray
Annotation
CGH
snapCGH
Microarray
Annotation
CGH
snapCGH
updated 9.7 years ago by
Sean Davis
21k • written 9.7 years ago by
Guest User
★ 13k
0
votes
0
replies
766
views
analyses of CGH data
Microarray
CGH
Microarray
CGH
10.5 years ago
Isha Pandey Phd Scholar BITS Pilani Cam…
▴ 10
0
votes
0
replies
1.3k
views
Chr Info for array CGH - agilent 60K
CGH
CGH
10.6 years ago
Cian Murphy
▴ 40
0
votes
0
replies
841
views
snapCGH and clonesinfo
CGH
limma
snapCGH
CGH
limma
snapCGH
10.9 years ago
Juliet Hannah
▴ 360
0
votes
1
reply
1.3k
views
CNTools error message
CGH
probe
DNAcopy
CGH
probe
DNAcopy
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
nac
▴ 280
0
votes
1
reply
1.4k
views
CGHweb and cghFLasso
CGH
CGH
updated 12.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.6 years ago by
Chris Fenton
▴ 80
0
votes
3
replies
2.4k
views
Script to save plots in Pdf format ( DNAcopy)
CGH
PROcess
CGH
PROcess
updated 13.0 years ago by
Thomas Hampton
▴ 750 • written 13.0 years ago by
nac
▴ 280
0
votes
0
replies
1.5k
views
seeking advice on analyzing CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
13.4 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
854
views
how to import Agilent CGH custom design xml file into limma
Normalization
CGH
probe
limma
Normalization
CGH
probe
limma
13.5 years ago
Sean Davis
21k
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH
CGH
probe
aCGH
snapCGH
aCGH
CGH
probe
aCGH
snapCGH
updated 13.5 years ago by
Sean Davis
21k • written 13.5 years ago by
Jarek Bryk
▴ 110
0
votes
2
replies
1.2k
views
memory limit
CGH
trigger
CGH
trigger
updated 13.5 years ago by
Steve Lianoglou
★ 13k • written 13.5 years ago by
Noemi Andor
▴ 100
0
votes
1
reply
1.4k
views
aCGH...'Genomic events'
CGH
CGH
updated 13.6 years ago by
Sean Davis
21k • written 13.6 years ago by
BTIS Department
▴ 10
0
votes
1
reply
1.3k
views
limma Agilent Normalization
Normalization
CGH
Normalization
CGH
updated 13.8 years ago by
Sean Davis
21k • written 13.8 years ago by
Noemi Andor
▴ 100
0
votes
0
replies
899
views
CGHcall problem
CGH
CGHcall
CGH
CGHcall
14.0 years ago
Erik Dassi
▴ 10
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH
snapCGH
Ringo
CGH
snapCGH
Ringo
updated 14.0 years ago by
Joern Toedling
▴ 450 • written 14.0 years ago by
Chris Fenton
▴ 80
0
votes
7
replies
1.4k
views
CGH analysis without genome positions
CGH
CGH
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
adam_pgsql
▴ 70
0
votes
1
reply
1.5k
views
CNV analysis with cghMCR/CNTools
GO
CGH
hgu133a
hgu95av2
GO
CGH
hgu133a
hgu95av2
updated 14.2 years ago by
John Zhang
★ 2.9k • written 14.2 years ago by
Tim Smith
★ 1.1k
0
votes
2
replies
1.3k
views
Calling genes present or absent in CGH data
CGH
limma
CGH
limma
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
adam_pgsql
▴ 70
0
votes
0
replies
1.2k
views
Bioconductor 2.5 is released
Sequencing
miRNA
Microarray
qPCR
Annotation
Network
Bayesian
Regression
CGH
stam
Rintact
14.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
1.0k
views
problems with snapCGH readPositionalInfo processCGH
CGH
snapCGH
CGH
snapCGH
14.6 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
901
views
rtracklayer browserView
CGH
rtracklayer
CGH
rtracklayer
14.6 years ago
Giulio Di Giovanni
▴ 540
0
votes
0
replies
1.0k
views
general CGH threshold question
aCGH
CGH
aCGH
GLAD
snapCGH
aCGH
CGH
aCGH
GLAD
snapCGH
14.7 years ago
Wolfgang RAFFELSBERGER
▴ 140
0
votes
1
reply
909
views
NimbleGen HG18 CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
updated 14.7 years ago by
Sean Davis
21k • written 14.7 years ago by
Abcis
▴ 10
0
votes
0
replies
749
views
error in runBioHMM() (package snapCGH)
CGH
snapCGH
CGH
snapCGH
15.0 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
1
reply
806
views
How to run bioHMM on Affymetrix data?
CGH
CGH
updated 15.0 years ago by
Oosting, J. PATH
▴ 550 • written 15.0 years ago by
Stacey Burrows
▴ 30
0
votes
2
replies
1.1k
views
How to display chromosome rapresentation ?
CGH
impute
CGH
impute
updated 15.1 years ago by
Sean Davis
21k • written 15.1 years ago by
Giulio Di Giovanni
▴ 540
0
votes
1
reply
981
views
Where to download annotation package for Agilent human CGH 44B
Annotation
CGH
Annotation
CGH
updated 15.2 years ago by
Marc Carlson
★ 7.2k • written 15.2 years ago by
Daren Tan
▴ 190
0
votes
0
replies
985
views
Annotation package for Agilent human CGH 44B
Annotation
CGH
Homo sapiens
Annotation
CGH
Homo sapiens
15.2 years ago
Daren Tan
▴ 190
0
votes
1
reply
1.3k
views
A CGH platform question
SNP
Genetics
Coverage
CGH
affy
SNP
Genetics
Coverage
CGH
affy
updated 15.3 years ago by
Henrik Bengtsson
★ 2.4k • written 15.3 years ago by
Johan Lindberg
▴ 70
0
votes
1
reply
733
views
CGH analysis in non-model organism
CGH
CGH
updated 15.4 years ago by
Sean Davis
21k • written 15.4 years ago by
Mingkwan Nipitwattanaphon
▴ 30
0
votes
5
replies
1.2k
views
quality assessment and preprocessing for tiling array-based CGH data
CGH
probe
CGH
probe
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Leon Yee
▴ 110
0
votes
0
replies
1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP
Genetics
Pathways
Cancer
CGH
microRNA
SNP
Genetics
Pathways
Cancer
CGH
microRNA
15.5 years ago
Florian Markowetz
▴ 20
0
votes
1
reply
969
views
normexp error (while using snapCGH)
CGH
snapCGH
CGH
snapCGH
updated 15.6 years ago by
Artur Veloso
▴ 340 • written 15.6 years ago by
Abhilash Venu
▴ 340
0
votes
1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation
Cancer
CGH
Annotation
Cancer
CGH
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
9
replies
1.7k
views
gains and losses via mode shifting
Cancer
CGH
Cancer
CGH
15.8 years ago
Oscar Rueda
▴ 60
0
votes
0
replies
705
views
snapCGH package - processCGH
CGH
CGH
15.8 years ago
Henrique Proença
▴ 80
0
votes
5
replies
1.2k
views
gains and losses via mode shifting
CGH
CGH
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
Benjamin Otto
▴ 830
0
votes
2
replies
1.0k
views
cross species CGH Nimblegene arrays
CGH
CGH
updated 16.0 years ago by
Alicia Oshlack
▴ 70 • written 16.0 years ago by
mb23
▴ 30
0
votes
0
replies
836
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH
CGH
16.0 years ago
mb23
▴ 30
0
votes
2
replies
878
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH
CGH
updated 16.0 years ago by
Sean Davis
21k • written 16.0 years ago by
mb23
▴ 30
0
votes
0
replies
958
views
New Bioconductor package: rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
16.0 years ago
Michael Lawrence
▴ 620
0
votes
2
replies
849
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH
CGH
updated 16.0 years ago by
Abhilash Venu
▴ 340 • written 16.0 years ago by
Sean Davis
21k
0
votes
0
replies
623
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH
CGH
16.1 years ago
Sean Davis
21k
0
votes
1
reply
1.1k
views
array CGH - raw data analysis
CGH
CGH
updated 16.1 years ago by
Sean Davis
21k • written 16.1 years ago by
João Fadista
▴ 500
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Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
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Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
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It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …
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Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
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I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
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