Showing : cgh • reset
0
votes
1
reply
817
views
array CGH software
CGH CGH
written 16.7 years ago by ▴ 10
1
vote
2
replies
2.3k
views
Columns used by read.maimages for Agilent arrays
Annotation CGH limma
11.7 years ago • updated 6.5 years ago Gordon Smyth 50k
2
votes
3
replies
1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.5 years ago by 50k • written 11.7 years ago by ★ 1.5k
0
votes
0
replies
753
views
How to combine CGHcall objects
cghcall r cgh copy number
6.9 years ago kitcurtius • 0
5
votes
3
replies
1.6k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 690 • written 7.7 years ago by 21k
0
votes
0
replies
823
views
problem in doing aCGH+SNP analysis
cgh
9.0 years ago kajayh • 0
0
votes
1
reply
1.5k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 9.7 years ago by 21k • written 9.7 years ago by ★ 13k
0
votes
0
replies
768
views
analyses of CGH data
Microarray CGH Microarray CGH
10.5 years ago Isha Pandey Phd Scholar BITS Pilani Cam… ▴ 10
0
votes
0
replies
1.3k
views
Chr Info for array CGH - agilent 60K
CGH CGH
10.7 years ago Cian Murphy ▴ 40
0
votes
0
replies
845
views
snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
10.9 years ago Juliet Hannah ▴ 360
0
votes
1
reply
1.3k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 280
0
votes
1
reply
1.4k
views
CGHweb and cghFLasso
CGH CGH
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 80
0
votes
3
replies
2.4k
views
Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 13.1 years ago by ▴ 750 • written 13.1 years ago by ▴ 280
0
votes
0
replies
1.5k
views
seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
13.5 years ago Paul Shannon ★ 1.1k
0
votes
0
replies
856
views
how to import Agilent CGH custom design xml file into limma
Normalization CGH probe limma Normalization CGH probe limma
13.5 years ago Sean Davis 21k
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 110
0
votes
2
replies
1.2k
views
memory limit
CGH trigger CGH trigger
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 100
0
votes
1
reply
1.4k
views
aCGH...'Genomic events'
CGH CGH
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 10
0
votes
1
reply
1.3k
views
limma Agilent Normalization
Normalization CGH Normalization CGH
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 100
0
votes
0
replies
902
views
CGHcall problem
CGH CGHcall CGH CGHcall
14.0 years ago Erik Dassi ▴ 10
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.0 years ago by ▴ 450 • written 14.0 years ago by ▴ 80
0
votes
7
replies
1.4k
views
CGH analysis without genome positions
CGH CGH
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 70
0
votes
1
reply
1.5k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 14.3 years ago by ★ 2.9k • written 14.3 years ago by ★ 1.1k
0
votes
2
replies
1.3k
views
Calling genes present or absent in CGH data
CGH limma CGH limma
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 70
0
votes
0
replies
1.2k
views
Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
14.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
0
replies
1.0k
views
problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
14.6 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
902
views
rtracklayer browserView
CGH rtracklayer CGH rtracklayer
14.6 years ago Giulio Di Giovanni ▴ 540
0
votes
0
replies
1.0k
views
general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
14.7 years ago Wolfgang RAFFELSBERGER ▴ 140
0
votes
1
reply
910
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 10
0
votes
0
replies
751
views
error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
15.0 years ago Wolfgang Raffelsberger ▴ 160
0
votes
1
reply
808
views
How to run bioHMM on Affymetrix data?
CGH CGH
updated 15.0 years ago by ▴ 550 • written 15.0 years ago by ▴ 30
0
votes
2
replies
1.1k
views
How to display chromosome rapresentation ?
CGH impute CGH impute
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 540
0
votes
1
reply
984
views
Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 190
0
votes
0
replies
989
views
Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
15.2 years ago Daren Tan ▴ 190
0
votes
1
reply
1.3k
views
A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 15.4 years ago by ★ 2.4k • written 15.4 years ago by ▴ 70
0
votes
1
reply
734
views
CGH analysis in non-model organism
CGH CGH
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 30
0
votes
5
replies
1.2k
views
quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 110
0
votes
0
replies
1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
15.6 years ago Florian Markowetz ▴ 20
0
votes
1
reply
974
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
votes
1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 1.9k
0
votes
9
replies
1.7k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
15.8 years ago Oscar Rueda ▴ 60
0
votes
0
replies
707
views
snapCGH package - processCGH
CGH CGH
15.8 years ago Henrique Proença ▴ 80
0
votes
5
replies
1.2k
views
gains and losses via mode shifting
CGH CGH
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 830
0
votes
2
replies
1.0k
views
cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
0
votes
0
replies
844
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
16.0 years ago mb23 ▴ 30
0
votes
2
replies
884
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
0
votes
0
replies
962
views
New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
16.0 years ago Michael Lawrence ▴ 620
0
votes
2
replies
851
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by 21k
0
votes
0
replies
624
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
16.1 years ago Sean Davis 21k
0
votes
1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.2 years ago by 21k • written 16.2 years ago by ▴ 500
50 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
United States, just now
United States, just now
Canada, 1 minute ago
France/Marseille/Inserm, 9 minutes ago
France, 17 minutes ago
Traffic: 1011 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6