Showing : cgh • reset
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3
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2.0k
views
Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 11.4 years ago by ▴ 750 • written 11.4 years ago by ▴ 280
1
vote
2
replies
1.9k
views
Columns used by read.maimages for Agilent arrays
Annotation CGH limma
10.0 years ago • updated 4.8 years ago Gordon Smyth 46k
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8
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1.5k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
14.9 years ago jhs1jjm@leeds.ac.uk ▴ 230
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1.4k
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Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
13.9 years ago Florian Markowetz ▴ 20
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1.3k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
11.8 years ago Paul Shannon ★ 1.1k
0
votes
1
reply
1.3k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 11.8 years ago by 21k • written 11.8 years ago by ▴ 110
0
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1
reply
1.2k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 8.0 years ago by 21k • written 8.0 years ago by ★ 12k
0
votes
7
replies
1.2k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 14.9 years ago by ▴ 250 • written 14.9 years ago by ▴ 440
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5
replies
1.2k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 14.6 years ago by ▴ 290 • written 14.6 years ago by ▴ 740
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1
reply
1.1k
views
CGHweb and cghFLasso
CGH CGH
updated 10.9 years ago by 6.6k • written 10.9 years ago by ▴ 80
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votes
1
reply
1.1k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 12.6 years ago by ★ 2.9k • written 12.6 years ago by ★ 1.1k
0
votes
7
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1.1k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 230
0
votes
8
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1.1k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 15.1 years ago by ▴ 100 • written 15.1 years ago by ★ 1.2k
0
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0
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1.1k
views
Chr Info for array CGH - agilent 60K
CGH CGH
9.0 years ago Cian Murphy ▴ 40
0
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5
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1.1k
views
from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 15.6 years ago by ▴ 60 • written 15.6 years ago by ▴ 90
5
votes
3
replies
1.0k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 5.4 years ago by 570 • written 6.0 years ago by 21k
0
votes
1
reply
1.0k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 15.1 years ago by ▴ 70 • written 15.1 years ago by ★ 1.9k
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votes
1
reply
1.0k
views
A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 13.7 years ago by ★ 2.4k • written 13.7 years ago by ▴ 70
0
votes
1
reply
1.0k
views
limma Agilent Normalization
Normalization CGH Normalization CGH
updated 12.2 years ago by 21k • written 12.2 years ago by ▴ 100
0
votes
1
reply
989
views
aCGH...'Genomic events'
CGH CGH
updated 11.9 years ago by 21k • written 11.9 years ago by ▴ 10
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9
replies
981
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
14.1 years ago Oscar Rueda ▴ 60
0
votes
1
reply
973
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 18.3 years ago by 13k • written 18.3 years ago by ▴ 810
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votes
0
replies
972
views
JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
14.5 years ago Robert Castelo ★ 2.9k
0
votes
0
replies
958
views
Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
18.2 years ago grischa tödt ▴ 30
0
votes
7
replies
951
views
CGH analysis without genome positions
CGH CGH
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 70
0
votes
1
reply
934
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
14.9 years ago Hervé Pagès 15k
0
votes
2
replies
920
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 12.3 years ago by ▴ 450 • written 12.3 years ago by ▴ 80
0
votes
0
replies
914
views
Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
12.8 years ago Patrick Aboyoun 1.6k
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4
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905
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 14.9 years ago by ▴ 230 • written 14.9 years ago by ▴ 110
0
votes
1
reply
905
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 10.6 years ago by 25k • written 10.6 years ago by ▴ 280
0
votes
2
replies
902
views
memory limit
CGH trigger CGH trigger
updated 11.9 years ago by 13k • written 11.9 years ago by ▴ 100
0
votes
2
replies
895
views
Calling genes present or absent in CGH data
CGH limma CGH limma
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 70
0
votes
1
reply
888
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 230
0
votes
1
reply
888
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 15.8 years ago by ▴ 310 • written 15.8 years ago by ▴ 30
0
votes
3
replies
843
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 16.2 years ago by ▴ 170 • written 16.2 years ago by 21k
2
votes
3
replies
843
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 4.8 years ago by 46k • written 10.1 years ago by ★ 1.5k
0
votes
0
replies
839
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
16.4 years ago Mark Reimers ▴ 70
0
votes
4
replies
836
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 230
0
votes
1
reply
825
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 13.9 years ago by 21k • written 13.9 years ago by ★ 1.9k
0
votes
0
replies
778
views
Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
16.0 years ago Aedin Culhane ▴ 510
0
votes
2
replies
769
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 50
0
votes
1
reply
769
views
Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ▴ 190
0
votes
0
replies
767
views
general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
13.0 years ago Wolfgang RAFFELSBERGER ▴ 140
0
votes
0
replies
764
views
problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
12.9 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
761
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
15.4 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
754
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
17.4 years ago Yi, Andrew ▴ 20
0
votes
5
replies
737
views
gains and losses via mode shifting
CGH CGH
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 830
0
votes
5
replies
730
views
quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 110
0
votes
4
replies
724
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 230
0
votes
0
replies
719
views
aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
15.7 years ago Sean Davis 21k
50 results • Page 1 of 1
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Comment: An ESR essay about software design, and how it applies to Bioconductor by Gary • 0
It's relevant for me, thank you for the information!
Comment: An ESR essay about software design, and how it applies to Bioconductor by Gary • 0
Thank you for sharing!
Comment: conditional command within GRanges by Basti ▴ 390
I can't reproduce your issue because you did not provided an example of your dataset (example with `dput(head(data1))`, but in the first ca…
Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120
That sounds like you have the wrong version of the annotation compared to which version you used for the quantification?
Comment: Error in Create switchAnalyzeRlist by bpshtiwan ▴ 10
Great... now it is same. but still I have problem with four possibilities during using IsoformSwitchAnalyzeR. Knidly, any idea where is the…
Votes
Answer: WHat is the difference between DEG and TopVarGenes in DESEq2?
Answer: WHat is the difference between DEG and TopVarGenes in DESEq2?
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
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