Showing : cgh • reset
5
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3
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1.6k
views
Classes and methods for working with segmented copy number data
cgh copynumber
updated 7.1 years ago by 690 • written 7.7 years ago by 21k
2
votes
3
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1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.5 years ago by 50k • written 11.7 years ago by ★ 1.5k
1
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2
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2.3k
views
Columns used by read.maimages for Agilent arrays
Annotation CGH limma
11.7 years ago • updated 6.5 years ago Gordon Smyth 50k
0
votes
0
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1.3k
views
Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
0
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0
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679
views
cgh
CGH CGH
19.3 years ago Auer Michael ▴ 250
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0
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1.1k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
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1
reply
789
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.7 years ago by ▴ 20 • written 18.7 years ago by ▴ 30
0
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0
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607
views
lowess, quantreg, waveslim
CGH CGH
18.7 years ago Sorani, Marco ▴ 30
0
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0
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1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.1 years ago Mark Reimers ▴ 70
0
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3
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1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 17.9 years ago by ▴ 190 • written 17.9 years ago by 21k
0
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3
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1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
0
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0
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892
views
scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
17.9 years ago Steven McKinney ▴ 310
0
votes
0
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672
views
spotsegmentation
CGH spotSegmentation CGH spotSegmentation
17.9 years ago Abdel Benajjou ▴ 10
0
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0
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885
views
Analysing categorical CGH data
Clustering Cancer CGH made4 Clustering Cancer CGH made4
17.8 years ago Richard Birnie ▴ 10
0
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0
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1.0k
views
Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
17.7 years ago Aedin Culhane ▴ 510
0
votes
1
reply
986
views
Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.6 years ago by ▴ 40 • written 17.7 years ago by ▴ 140
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 17.5 years ago by ▴ 310 • written 17.5 years ago by ▴ 30
0
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0
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1.1k
views
aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
17.4 years ago Sean Davis 21k
0
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1
reply
703
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
0
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2
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1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
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5
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1.6k
views
from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 17.3 years ago by ▴ 60 • written 17.3 years ago by ▴ 90
0
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0
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670
views
what is the equivalent of normalize.qspline for 2 color arrays?
Normalization CGH affy limma Normalization CGH affy limma
17.3 years ago Betty Gilbert ▴ 50
0
votes
0
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741
views
how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
17.1 years ago Ruppert Valentino ▴ 270
0
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0
replies
1.1k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.1 years ago Dick Beyer ★ 1.4k
0
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1
reply
1.3k
views
CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 16.8 years ago by ▴ 70 • written 16.8 years ago by ★ 1.9k
0
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8
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1.6k
views
annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 16.8 years ago by ▴ 100 • written 16.8 years ago by ★ 1.2k
0
votes
1
reply
816
views
array CGH software
CGH CGH
written 16.7 years ago by ▴ 10
0
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1
reply
1.1k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
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4
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1.1k
views
create CNA object in DNAcopy package with agilent data
CGH CGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
votes
4
replies
1.2k
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
7
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1.6k
views
processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 230
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
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1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
votes
8
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2.0k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
16.5 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
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0
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598
views
Array CGH from A-Z
CGH CGH
16.4 years ago Srinivas Iyyer ▴ 600
0
votes
5
replies
1.6k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 16.3 years ago by ▴ 290 • written 16.3 years ago by ▴ 740
0
votes
1
reply
1.1k
views
array CGH - raw data analysis
CGH CGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 500
0
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0
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624
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
16.1 years ago Sean Davis 21k
0
votes
2
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849
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by 21k
0
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0
replies
959
views
New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
16.0 years ago Michael Lawrence ▴ 620
0
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2
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1.0k
views
cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by ▴ 70 • written 16.0 years ago by ▴ 30
0
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2
replies
881
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 30
0
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0
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839
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
16.0 years ago mb23 ▴ 30
0
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5
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1.2k
views
gains and losses via mode shifting
CGH CGH
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 830
0
votes
9
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1.7k
views
gains and losses via mode shifting
Cancer CGH Cancer CGH
15.8 years ago Oscar Rueda ▴ 60
0
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0
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705
views
snapCGH package - processCGH
CGH CGH
15.8 years ago Henrique Proença ▴ 80
0
votes
1
reply
1.1k
views
Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 1.9k
0
votes
1
reply
973
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ▴ 340
0
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0
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1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
15.6 years ago Florian Markowetz ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates by hortense96 • 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp by Basti ▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Votes
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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