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cghmcr
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1.1k
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questions on cghMCR package
DNAcopy
cghMCR
DNAcopy
cghMCR
updated 12.3 years ago by
Martin Morgan
25k • written 12.3 years ago by
nac
▴ 280
0
votes
1
reply
1.1k
views
SGOL plot
cghMCR
cghMCR
updated 8.8 years ago by
pascal.gellert
• 0 • written 12.5 years ago by
viritha kaza
▴ 580
0
votes
1
reply
843
views
vector size issue in CGHMCR
cghMCR
cghMCR
updated 13.1 years ago by
Sean Davis
21k • written 13.1 years ago by
nac
▴ 280
0
votes
1
reply
820
views
cghMCR bug?
Cancer
DNAcopy
cghMCR
Cancer
DNAcopy
cghMCR
updated 17.2 years ago by
John Zhang
★ 2.9k • written 17.2 years ago by
Ramon Diaz
★ 1.1k
0
votes
1
reply
1.3k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy
cghMCR
DNAcopy
cghMCR
updated 12.6 years ago by
Jianhua Zhang
▴ 20 • written 12.6 years ago by
viritha kaza
▴ 580
0
votes
0
replies
1.0k
views
Help on cghMCR units of gapAllowed
DNAcopy
cghMCR
DNAcopy
cghMCR
12.4 years ago
nac
▴ 280
0
votes
0
replies
967
views
seeking help on cghMCR pleeeease
DNAcopy
cghMCR
DNAcopy
cghMCR
12.4 years ago
nac
▴ 280
0
votes
0
replies
1.0k
views
Fwd: seeking help on cghMCR pleeeease
DNAcopy
cghMCR
DNAcopy
cghMCR
12.3 years ago
nac
▴ 280
0
votes
0
replies
831
views
problem with readPositionalInfo() for Nimblegen for ArrayCGH
snapCGH
cghMCR
snapCGH
cghMCR
12.8 years ago
Muksitul Haque
▴ 10
0
votes
0
replies
750
views
Error run cghMCR function in cghMCR package
cghmcr
6.4 years ago
ljia1180
• 0
0
votes
0
replies
813
views
Converting Seglist to segments file
Cancer
convert
DNAcopy
snapCGH
cghMCR
Cancer
convert
DNAcopy
snapCGH
cghMCR
16.8 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
cghMCR package - Jianhua Zhang
DNAcopy
cghMCR
DNAcopy
cghMCR
14.3 years ago
Luz G Alonso
▴ 20
0
votes
0
replies
1.2k
views
cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess
DNAcopy
cghMCR
PROcess
DNAcopy
cghMCR
12.5 years ago
viritha kaza
▴ 580
13 results • Page
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Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
Michael Love
41k
Starting from the very top, do you understand the error? You need to provide sample info that matches 1-to-1 the columns of the counts matr…
Answer: covariate with negative and positive values
by
Michael Love
41k
Not a problem. However, if the values are very large (eg 1e6) or very small (eg 1e-6), it's a good idea to center and scale the variable…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Usually I run `voomLmFit`, although in order to create the mean-variance trend plots for this particular post, I ran `voom`; I've checked -…
Comment: Error in champ.load(): The following specified files do not exist
by
Sherin
• 0
it worked! thank you so much!!
Comment: Multi factor design edgeR/Deseq2
by
Elizabeth
• 0
Sorry I realise this thread is ancient, but I'm wondering why it's ok to remove the last column from the design matrix? Also, why this desi…
Votes
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Comment: Reading huge bismark coverage files using bbseq::read.bismark
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