Showing : champ • reset
0
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33
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Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
1 day ago Mirella Aurora • 0
1
vote
2
replies
99
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Error in champ.load(): The following specified files do not exist
ChAMP
2 days ago Sherin • 0
1
vote
1
reply
257
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 8 weeks ago by 65k • written 8 weeks ago by • 0
0
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0
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181
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how to solve this error?
ChAMPdata ChAMP
8 weeks ago Meghana • 0
0
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0
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140
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champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
11 weeks ago Thalita • 0
0
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2
replies
558
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ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 11 weeks ago by • 0 • written 3 months ago by • 0
0
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7
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612
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Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 4 months ago by ▴ 770 • written 4 months ago by • 0
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 17 days ago by ▴ 170 • written 4 months ago by ▴ 10
2
votes
1
reply
560
views
ChAMP can't be found in Bioc3.18?
ChAMP
5 months ago ramonfallon ▴ 20
0
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3
replies
615
views
ChAMP trouble reading csv file
ChAMP
written 9 months ago by • 0
1
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7
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1.7k
views
Error using champ.import
ChAMP EPICv2
updated 3 days ago by • 0 • written 9 months ago by • 0
0
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3
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703
views
Error in champ.load() function
ChAMP
updated 11 months ago by 65k • written 11 months ago by • 0
0
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2
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684
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 11 months ago by 65k • written 11 months ago by • 0
0
votes
2
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986
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
12 months ago • updated 11 months ago arisarkar88 ▴ 40
2
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5
replies
1.8k
views
Problem at champ.load
ChAMPdata ChAMP
updated 5 weeks ago by 65k • written 12 months ago by • 0
0
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0
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573
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Unable to create pd file for ChAMP analysis
ChAMP
12 months ago Monalisa • 0
0
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0
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381
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Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
12 months ago Kan • 0
0
votes
2
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731
views
error in champ.SVD
svd methylation champ
updated 12 months ago by 3.8k • written 12 months ago by • 0
1
vote
1
reply
720
views
champ.load IDAT files from subdirectories
ChAMP
updated 13 months ago by ▴ 770 • written 13 months ago by • 0
0
votes
1
reply
1.1k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 16 months ago by 65k • written 16 months ago by ▴ 10
1
vote
1
reply
651
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 16 months ago by 65k • written 16 months ago by • 0
1
vote
16
replies
3.2k
views
error in ChAMP loading file
ChAMP
updated 5 weeks ago by • 0 • written 17 months ago by • 0
0
votes
1
reply
539
views
Champ.impute - myLoad not found
ChAMP
updated 18 months ago by ▴ 770 • written 18 months ago by • 0
0
votes
1
reply
1.2k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 23 months ago by ▴ 770 • written 23 months ago by ▴ 20
0
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7
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2.6k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 18 months ago by 65k • written 23 months ago by • 0
0
votes
4
replies
1.3k
views
Problem installing ChAMP package.
ChAMP
2.0 years ago Yu-min • 0
0
votes
1
reply
837
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 2.0 years ago by ▴ 770 • written 2.0 years ago by • 0
0
votes
3
replies
1.1k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
2.1 years ago • updated 23 months ago ramonfallon ▴ 20
0
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1
reply
774
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 2.1 years ago by • 0 • written 2.1 years ago by • 0
0
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0
replies
853
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
2.3 years ago behr201 • 0
0
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3
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1.0k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 2.3 years ago by ▴ 770 • written 2.3 years ago by • 0
0
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0
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813
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
2.4 years ago Paulina • 0
3
votes
4
replies
8.5k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 19 months ago by • 0 • written 2.4 years ago by • 0
0
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2
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836
views
problems opening ChAMP
ChAMP
updated 2.5 years ago by ▴ 770 • written 2.5 years ago by • 0
0
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1
reply
1.1k
views
error in champ.norm
champ.norm ChAMP
updated 2.5 years ago by ★ 3.9k • written 2.5 years ago by • 0
0
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0
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740
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
2.6 years ago FWNL15 • 0
0
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2
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1.2k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
2.7 years ago • updated 2.6 years ago Jinyue • 0
0
votes
5
replies
1.5k
views
Loading ChAMP IdatFiles with two different ArrayTypes
ChAMP
updated 2.7 years ago by ▴ 270 • written 2.7 years ago by • 0
0
votes
6
replies
3.3k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.8 years ago FWNL15 • 0
1
vote
2
replies
2.5k
views
Error using ChAMP SVD analysis
ChAMP
updated 13 months ago by • 0 • written 2.8 years ago by • 0
1
vote
1
reply
1.3k
views
How to solve the error in running champ.DMP()
ChAMP
updated 2.9 years ago by ▴ 770 • written 2.9 years ago by ▴ 10
2
votes
1
reply
1.0k
views
How to save results of each step from ChAMP pipeline?
Bioconductor ChAMP
updated 2.9 years ago by ▴ 270 • written 2.9 years ago by ▴ 10
2
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1
reply
1.2k
views
How to download the ChAMP dependency ChAMPdata
ChAMP ChAMPdata
updated 2.9 years ago by 3.8k • written 2.9 years ago by ▴ 10
0
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2
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1.3k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
3.0 years ago arisarkar88 ▴ 40
0
votes
2
replies
1.2k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 10 months ago by • 0 • written 3.2 years ago by • 0
0
votes
2
replies
861
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.2 years ago sissialva21 • 0
0
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0
replies
597
views
ChAMP batch effect
ChAMP
3.3 years ago SMA180043 • 0
1
vote
2
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1.1k
views
what is "sample_well" and "pool_ID" in ChAMP
ChAMP
3.3 years ago Hongbii • 0
3
votes
5
replies
2.1k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation ChAMP
updated 8 weeks ago by • 0 • written 3.4 years ago by • 0
2
votes
7
replies
2.4k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 6 months ago by • 0 • written 3.4 years ago by ▴ 20
50 results • Page 1 of 1
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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
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Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
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