Bioconductor Champdata

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ChAMPdata ChAMP

updated 6 weeks ago by James W. MacDonald 65k • written 12 months ago by angel • 0

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146

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ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

updated 3 days ago by James W. MacDonald 65k • written 7 days ago by Mirella Aurora • 0

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ChAMPdata ChAMP

updated 2.3 years ago by Basti ▴ 780 • written 2.3 years ago by mariat • 0

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1.2k

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ChAMP limma Bioconductor ChAMPdata

2.7 years ago • updated 2.6 years ago Jinyue • 0

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loaddata ChAMPdata champload R ChAMP

updated 11 months ago by hfbarrerat • 0 • written 3.2 years ago by Bethan • 0

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Illumina methylationArrayAnalysis ChAMPdata ChAMP

3.2 years ago sissialva21 • 0

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1.2k

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ChAMP ChAMPdata

updated 3.0 years ago by shepherl 3.8k • written 3.0 years ago by Federica ▴ 10

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782

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ChAMP shiny ChAMPdata

updated 2.1 years ago by anna.stanislawska • 0 • written 2.1 years ago by Mari • 0

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194

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ChAMPdata ChAMP

9 weeks ago Meghana • 0

9 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0