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champdata
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1.2k
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How to download the ChAMP dependency ChAMPdata
ChAMP
ChAMPdata
updated 3.0 years ago by
shepherl
3.8k • written 3.0 years ago by
Federica
▴ 10
2
votes
5
replies
1.9k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 6 weeks ago by
James W. MacDonald
65k • written 12 months ago by
angel
• 0
1
vote
4
replies
140
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 2 days ago by
James W. MacDonald
65k • written 6 days ago by
Mirella Aurora
• 0
0
votes
0
replies
192
views
how to solve this error?
ChAMPdata
ChAMP
9 weeks ago
Meghana
• 0
0
votes
2
replies
866
views
Error myDMP not found
Illumina
methylationArrayAnalysis
ChAMPdata
ChAMP
3.2 years ago
sissialva21
• 0
0
votes
1
reply
780
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 2.1 years ago by
anna.stanislawska
• 0 • written 2.1 years ago by
Mari
• 0
0
votes
2
replies
1.2k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP
limma
Bioconductor
ChAMPdata
2.7 years ago • updated 2.6 years ago
Jinyue
• 0
0
votes
2
replies
1.2k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 11 months ago by
hfbarrerat
• 0 • written 3.2 years ago by
Bethan
• 0
0
votes
3
replies
1.0k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata
ChAMP
updated 2.3 years ago by
Basti
▴ 780 • written 2.3 years ago by
mariat
• 0
9 results • Page
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Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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Answer: How to retrieve gene ontology GO class from gene list?
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