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James W. MacDonald
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Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴
20
Thanks @atpoint for your answer!
The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★
4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★
4.0k
Please see: https://support.bioconductor.org/p/p134551/
I asked basically the same before. In short, reference level might have an influ…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
•
0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio
by
ATpoint
★
4.0k
> Increase variability for mutants: use larger subtractive modifiers
I was thinking the same as swbarnes. You're doing some data munging h…
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