Bioconductor Champdata

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ChAMPdata ChAMP

updated 5 weeks ago by James W. MacDonald 65k • written 12 months ago by angel • 0

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ChAMP ChAMPdata

updated 2.9 years ago by shepherl 3.8k • written 2.9 years ago by Federica ▴ 10

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ChAMP limma Bioconductor ChAMPdata

2.7 years ago • updated 2.6 years ago Jinyue • 0

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1.2k

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loaddata ChAMPdata champload R ChAMP

updated 10 months ago by hfbarrerat • 0 • written 3.2 years ago by Bethan • 0

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1.0k

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ChAMPdata ChAMP

updated 2.3 years ago by Basti ▴ 770 • written 2.3 years ago by mariat • 0

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Illumina methylationArrayAnalysis ChAMPdata ChAMP

3.2 years ago sissialva21 • 0

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774

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ChAMP shiny ChAMPdata

updated 2.1 years ago by anna.stanislawska • 0 • written 2.1 years ago by Mari • 0

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ChAMPdata ChAMP

8 weeks ago Meghana • 0

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ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

1 day ago Mirella Aurora • 0

9 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

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