Bioconductor Champdata

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1.2k

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ChAMP ChAMPdata

updated 3.0 years ago by shepherl 3.8k • written 3.0 years ago by Federica ▴ 10

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1.9k

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ChAMPdata ChAMP

updated 6 weeks ago by James W. MacDonald 65k • written 12 months ago by angel • 0

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142

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ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

updated 2 days ago by James W. MacDonald 65k • written 6 days ago by Mirella Aurora • 0

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192

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ChAMPdata ChAMP

9 weeks ago Meghana • 0

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867

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Illumina methylationArrayAnalysis ChAMPdata ChAMP

3.2 years ago sissialva21 • 0

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782

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ChAMP shiny ChAMPdata

updated 2.1 years ago by anna.stanislawska • 0 • written 2.1 years ago by Mari • 0

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1.2k

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ChAMP limma Bioconductor ChAMPdata

2.7 years ago • updated 2.6 years ago Jinyue • 0

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1.2k

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loaddata ChAMPdata champload R ChAMP

updated 11 months ago by hfbarrerat • 0 • written 3.2 years ago by Bethan • 0

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1.0k

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ChAMPdata ChAMP

updated 2.3 years ago by Basti ▴ 780 • written 2.3 years ago by mariat • 0

9 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0