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cheminformatics
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
8 months ago
Sean
• 0
0
votes
1
reply
810
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
2.7 years ago
adelenelai
• 0
1
vote
1
reply
893
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.1 years ago
Anthony Nash
▴ 20
3
votes
1
reply
685
views
Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
limma
edger
deseq2
cheminformatics
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
perdedorium
• 0
2
votes
3
replies
1.1k
views
cellHTS2 importa and analysing data from chemical compound screening
cellhts2
cheminformatics
updated 7.4 years ago by
Joseph Barry
▴ 160 • written 7.4 years ago by
Andreia Fonseca
▴ 810
1
vote
3
replies
1.9k
views
Bioc 3.3 Windows 10 eiR package fails to install
software error
R
cheminformatics
package installation
eiR
updated 7.9 years ago by
khoran
• 0 • written 7.9 years ago by
rjrich
• 0
0
votes
0
replies
1.2k
views
BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics
Visualization
Cancer
Ovarian
DEXSeq
minfi
DESeq2
BaseSpaceR
epivizr
minfi
10.8 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics
Cheminformatics
Visualization
xcms
Metabolomics
Cheminformatics
Visualization
14.2 years ago
Gabriella Rustici
▴ 60
0
votes
0
replies
874
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
15.8 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
948
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
16.6 years ago
Thomas Girke
★ 1.7k
10 results • Page
1 of 1
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Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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Gordon Smyth
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ATpoint
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