Bioconductor Chipenrich

Showing : chipenrich • reset

votes

replies

4.4k

views

chipenrich granges distancetonearest function dataframe

6.5 years ago • updated 6.4 years ago rbronste ▴ 60

vote

757

views

chipenrich

updated 6.5 years ago by rcavalca ▴ 140 • written 6.6 years ago by rbronste ▴ 60

vote

873

views

chipenrich

updated 6.9 years ago by rcavalca ▴ 140 • written 7.0 years ago by Ashley.Sawle • 0

vote

replies

1.1k

views

chipenrich

updated 7.1 years ago by rcavalca ▴ 140 • written 7.1 years ago by jamie.gearing ▴ 60

votes

replies

870

views

chipenrich

7.6 years ago Pierre-François Roux • 0

votes

replies

2.4k

views

Annotation ChIPpeakAnno DiffBind chipenrich

9.6 years ago Rory Stark ★ 5.1k

6 results • Page 1 of 1

Recent ...

Replies

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Awards • All

Scholar to ATpoint ★ 4.0k