Showing : chipqcreport • reset
3
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ChIPQC - can't read in bam files
chipqc chipqcreport
6.3 years ago molly_the_minotaur ▴ 30
0
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1
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2.4k
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Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc chipqcreport
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by • 0
0
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4
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1.9k
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ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC ChIPQCreport
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by ▴ 60
0
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4
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1.9k
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Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
7.4 years ago • updated 7.3 years ago jared.andrews07 ▴ 30
4
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2
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1.5k
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ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC ChIPQCreport
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by ▴ 60
1
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3
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1.3k
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ChIPQC installation does not force latest DiffBind version
chipqc diffbind chipqcreport
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by ▴ 50
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2
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1.2k
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ChipQCreport coverage plot failure?
ChipQC chipqcreport
6.4 years ago tapio.envall • 0
0
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1
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712
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Empty ChipQC Report
ChipQCReport
updated 23 months ago by • 0 • written 2.1 years ago by • 0
8 results • Page 1 of 1
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
A: Linear regression in DESeq2
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
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