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chipqcreport
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ChIPQC - can't read in bam files
chipqc
chipqcreport
5.5 years ago
molly_the_minotaur
▴ 30
0
votes
4
replies
1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
6.6 years ago • updated 6.5 years ago
jared.andrews07
▴ 30
0
votes
4
replies
1.5k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC
ChIPQCreport
updated 6.8 years ago by
Thomas Carroll
▴ 420 • written 6.8 years ago by
ZheFrench
▴ 40
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc
diffbind
chipqcreport
updated 6.8 years ago by
Thomas Carroll
▴ 420 • written 6.8 years ago by
Coby Viner
▴ 50
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC
ChIPQCreport
updated 6.8 years ago by
Thomas Carroll
▴ 420 • written 6.8 years ago by
ZheFrench
▴ 40
0
votes
2
replies
946
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
5.6 years ago
tapio.envall
• 0
0
votes
1
reply
2.2k
views
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc
chipqcreport
updated 6.8 years ago by
Thomas Carroll
▴ 420 • written 6.8 years ago by
Roger
• 0
0
votes
1
reply
507
views
Empty ChipQC Report
ChipQCReport
updated 14 months ago by
Okan
• 0 • written 16 months ago by
stacy.genovese
• 0
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
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mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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