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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★
3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
•
0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴
30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data:
library(OmnipathR)
cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
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Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something.
Notably the same code works on o…
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