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chromatin
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1
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1.3k
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extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
gryderart
• 0
0
votes
0
replies
1.1k
views
Job:
Postdoctoral position - Molecular Biologist
epigenomics
RNA methylation
RNA dynamics
chromatin
computational biology
Job
6.3 years ago
mattia pelizzola
▴ 200
1
vote
4
replies
1.9k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 6.4 years ago by
Gord Brown
▴ 650 • written 6.4 years ago by
tgjohnst
• 0
5
votes
7
replies
4.5k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
7.0 years ago
BioinfGuru
▴ 20
0
votes
0
replies
1.8k
views
Job:
Harvard Medical School: Postdoctoral Research Associate position
Genomic Assays
Chromatin
Computational Biology
Job
9.4 years ago
Doe, Aimee
▴ 40
5 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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