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chromosome
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How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
12 months ago
Liliian
• 0
3
votes
5
replies
1.8k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 2.4 years ago by
Hervé Pagès
16k • written 2.4 years ago by
jon.klonowski
▴ 40
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 9 months ago by
James W. MacDonald
65k • written 3.7 years ago by
Mahan
• 0
0
votes
4
replies
772
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
Bine
▴ 40
0
votes
2
replies
773
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
knholm
• 0
0
votes
0
replies
504
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
4.0 years ago
heiko_kin
▴ 60
1
vote
1
reply
487
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 4.1 years ago by
swbarnes2
★ 1.3k • written 4.1 years ago by
missmoparker
• 0
0
votes
1
reply
786
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
xchen8
• 0
2
votes
3
replies
1.9k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 6.2 years ago by
Hervé Pagès
16k • written 6.2 years ago by
Nathan Sheffield
▴ 10
1
vote
5
replies
2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.1 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
10 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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