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circos
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Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
9.3 years ago
Peter.Wood
• 0
0
votes
0
replies
917
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
6.6 years ago
Didi
▴ 10
0
votes
1
reply
817
views
R circlize package problem with drawing histogram
circlize
R
Circos
Plots
4.1 years ago
marvel479
• 0
0
votes
1
reply
813
views
package circlize: How to extend circos plot?
circlize
circos
3.8 years ago
Brian Smith
▴ 120
1
vote
1
reply
633
views
Visualizing Orthologs and Paralogs genes
Orthologs
Paralogs
porthomcl
circos
visualizing
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
mictadlo
▴ 10
0
votes
0
replies
545
views
Need help in plotting RNA-seq foldchange values in circos plot
Circos
updated 2.5 years ago by
Michael Love
41k • written 2.5 years ago by
pooja
• 0
6 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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