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circrna
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DESeq2 on CIRI results ?
deseq2
circrna
ciri
ciri2
6.0 years ago
sbcn
▴ 80
0
votes
7
replies
1.1k
views
DESEQ2 for circRNA normalisation
DESEQ2
circRNA
normalisation
updated 4.4 years ago by
Michael Love
41k • written 4.4 years ago by
zoe.ward
• 0
0
votes
4
replies
1.1k
views
Is circular RNA read out as linear fragments during Rsubread-DESeq2
deseq2
circrna
rsubread
updated 5.9 years ago by
Wei Shi
★ 3.6k • written 5.9 years ago by
csijst
• 0
1
vote
1
reply
827
views
DESeq2 Analysis of RNA-Edited Reads and Circular RNA
deseq2
circRNA
rna-editing
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
maxhenryhills
• 0
0
votes
0
replies
773
views
circRNAprofiler - miRNA binding sites
circRNA
RNA-seq
circRNAprofiler
3.5 years ago
Terra
• 0
0
votes
0
replies
498
views
visualization of circRNA
circRNA
circRNAprofiler
2.8 years ago
Bogdan
▴ 670
6 results • Page
1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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