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Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0

I identified 3804 genes with GO annotations. I put my liste of genes in this link [enter link description here][1] universe <- mapIds…

Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Hello, Thank you. I absolutely respect what you mention about p-values and logFC, I was just going to tackle that soon and thank you for po…

Comment: QSEA:Error in h(simpleError(msg, call)) by kf • 0

genome(qseaSet@regions)<-"BSgenome.Hsapiens.UCSC.hg38" solve the problem

Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus by James W. MacDonald 67k

I don't know what you mean by 'a pairwise comparison', but the two analyses are equivalent, except in the second analysis you want to do `t…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k

If you want to comment on an answer, please choose ADD COMMENT rather than ADD ANSWER, since you are not in fact adding an answer. ``` uni…

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Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: object 'hdac_targets' not found

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