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RNASeqPower citation

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Answer: Question about GWASTools gdsSubset by SuperD • 0

Have to define 'snp,scan' or 'scan,snp' for my case.

Comment: Not able to download recount3 data by Leonardo Collado Torres ★ 1.0k

Please don't reopen that issue thread, as it will ping lots of people. Can you try using the newly documented Amazon AWS mirror? ```R lib…

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this? > library(pd.mir…

Answer: struggling to create a heatmap by ATpoint ★ 2.1k

I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…

Answer: collapseReplicates error after tximeta by Michael Love 39k

The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…

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Significant reporter activity with mpralm function

Answer: I cannot install annotables package in Rstudio (macOS)

Answer: log2 of normalized counts for further analyzes

Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it

Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used

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Commentator to Lucia ▴ 40