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506
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Typo in citation for RNASeqPower
RNASeqPower
citation
22 months ago
stephenjjohnson
• 0
3
votes
2
replies
551
views
Submitting a new package prior to publication
package-creation
citation
submit-package
updated 4.3 years ago by
shepherl
3.8k • written 4.3 years ago by
Krutik Patel
▴ 10
2
votes
2
replies
815
views
change the citation of accepted Bioconductor R pacakage
citation
updated 5.7 years ago by
shepherl
3.8k • written 5.7 years ago by
xyluo1991
• 0
0
votes
1
reply
618
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Request Citation Permission
citation
updated 5.9 years ago by
Martin Morgan
25k • written 6.0 years ago by
takakoma
• 0
12
votes
5
replies
1.9k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.5 years ago
shepherl
3.8k
14
votes
8
replies
2.6k
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News:
Bioconductor packages now each have a DOI.
doi
citation
News
updated 6.6 years ago by
Martin Morgan
25k • written 6.7 years ago by
Sean Davis
21k
0
votes
2
replies
984
views
differences in formatting of the citation on the bioconductor link and from within R console
citation
7.6 years ago
bhakti.dwivedi
• 0
7 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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