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classification
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Job:
Two Bioinformatics Fellowship Positions at US EPA
bioinformatics
toxicology
Job
sequenicng
statistics
3.7 years ago • updated 3.4 years ago
whduke
• 0
3
votes
2
replies
1.1k
views
Using deseq2 with batch effects and classification as downstream analysis
deseq2
batch effect
classification
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
Maryam
• 0
1
vote
5
replies
1.2k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
5.7 years ago
Jenny.chien
• 0
0
votes
0
replies
779
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.8 years ago
Seymoo
• 0
0
votes
1
reply
1.1k
views
Classification with large number of qualitative variables
R
classification
qualitative variables
high dimensionnal
updated 7.4 years ago by
markus.riester
▴ 130 • written 7.4 years ago by
crichard
• 0
0
votes
0
replies
975
views
Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma
plotRLDF
microarray
classification
linear discriminant function
7.9 years ago
svlachavas
▴ 830
0
votes
1
reply
1.0k
views
Questions about the correct implementation of the function plotRLDF from R package limma regarding classification of a microarray dataset
limma
microarray
plotRLDF
classification
7.9 years ago
svlachavas
▴ 830
0
votes
0
replies
721
views
Package for classifying two classes of sequences using hidden markov models?
hmm
classification
8.0 years ago
vinod.acear
▴ 50
1
vote
1
reply
2.2k
views
edgeR GLM fitted values
edgeR
GLM
classification
rnaseq
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
Mattia
▴ 10
1
vote
2
replies
1.5k
views
Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification
machinelearning
microarray
multivariate
caret
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.4k
views
Error in R package "cancerclass" with function nvalidate
cancerclass
bioconductor
machinelearning
classification
9.0 years ago
svlachavas
▴ 830
0
votes
2
replies
1.1k
views
Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification
Classification
updated 9.7 years ago by
Sean Davis
21k • written 9.7 years ago by
Guest User
★ 13k
0
votes
3
replies
1.5k
views
Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification
CMA
Classification
CMA
updated 9.7 years ago by
Sean Davis
21k • written 9.7 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation
Classification
Clustering
Annotation
Classification
Clustering
9.9 years ago
Wolfgang Huber
★ 13k
0
votes
3
replies
1.5k
views
MLSeq Mathematical Concepts
Classification
edgeR
DESeq
MLSeq
Classification
edgeR
DESeq
MLSeq
updated 10.0 years ago by
Wolfgang Huber
★ 13k • written 10.0 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.5k
views
Support vector regression
Classification
Regression
Classification
Regression
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing
Annotation
Classification
Clustering
Sequencing
Annotation
Classification
10.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics
Classification
Regression
Genetics
Classification
Regression
11.0 years ago
CAMDA 2013
▴ 30
0
votes
0
replies
1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing
Microarray
Genetics
Classification
Clustering
Regression
Sequencing
Microarray
11.1 years ago
CAMDA 2013
▴ 30
0
votes
5
replies
3.1k
views
DESeq2
Normalization
Classification
Clustering
DESeq
cqn
DESeq2
Normalization
Classification
cqn
updated 11.1 years ago by
Michael Love
41k • written 11.1 years ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
2.1k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq
Microarray
Normalization
GO
Classification
Clustering
Cancer
Mus musculus
probe
GO
11.1 years ago
Matthew Thornton
▴ 350
0
votes
3
replies
3.0k
views
Subsetting expression sets for mass spec data - second ask
Classification
Cancer
PROcess
Classification
Cancer
PROcess
updated 11.4 years ago by
Sean Davis
21k • written 11.4 years ago by
McGee, Monnie
▴ 300
0
votes
3
replies
2.8k
views
PAMR- Package: Workflow and/or other methods
Classification
Classification
updated 11.4 years ago by
Sean Davis
21k • written 11.4 years ago by
Peter Kupfer
▴ 70
0
votes
0
replies
1.5k
views
Classification in Mass Spectrometry Data
Microarray
Classification
Cancer
Ovarian
PROcess
MLInterfaces
ASSIGN
Microarray
Cancer
11.5 years ago
McGee, Monnie
▴ 300
0
votes
0
replies
947
views
Questions regarding MCRestimate package
Classification
MCRestimate
Classification
MCRestimate
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Overlapping ROC plots
Classification
ROC
graph
Classification
ROC
graph
11.8 years ago
Yadav Sapkota
▴ 130
0
votes
0
replies
735
views
Question about MCRestimate
Classification
Classification
11.9 years ago
ZHENG FU
▴ 10
0
votes
5
replies
4.4k
views
probability of a point membership to a certain cluster
Classification
Classification
updated 12.2 years ago by
Steve Lianoglou
★ 13k • written 12.2 years ago by
Barbara Uszczynska
▴ 60
0
votes
0
replies
2.4k
views
'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray
Classification
limma
CMA
Microarray
Classification
limma
CMA
13.2 years ago
Santosh Patnaik
▴ 30
0
votes
4
replies
1.6k
views
RandomForest, supervised machine learning and uncertainty
GO
Classification
GO
Classification
updated 13.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.4 years ago by
January Weiner
▴ 370
0
votes
0
replies
875
views
Fwd: question regarding to MLInterface
Network
Classification
Network
Classification
13.4 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
17k
views
1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
13.9 years ago
David Lyon
▴ 340
0
votes
0
replies
1.5k
views
R Course 28-29 March in Heidelberg (EMBL)
Classification
Classification
14.2 years ago
Wolfgang Huber
★ 13k
0
votes
3
replies
980
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 14.2 years ago by
Naomi Altman
★ 6.0k • written 14.2 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.5k
views
Seeking assistance on ROC
Microarray
GO
Classification
ROC
graph
ASSIGN
Microarray
GO
Classification
ROC
graph
updated 14.2 years ago by
Steve Lianoglou
★ 13k • written 14.2 years ago by
Sean Davis
21k
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 14.2 years ago by
Naomi Altman
★ 6.0k • written 14.2 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.2k
views
compare function in CMA package
Classification
CMA
Classification
CMA
14.3 years ago
Javier Pérez Florido
▴ 840
0
votes
0
replies
1.2k
views
Statistical approach to compare differentiall expressed gene lists
Microarray
Classification
Microarray
Classification
14.3 years ago
qinghua xu
▴ 110
0
votes
0
replies
1.0k
views
回复: 回复: : Patent issues of classification algorithms
Microarray
Classification
Microarray
Classification
14.3 years ago
qinghua xu
▴ 110
0
votes
0
replies
716
views
转发: 回复: Patent issues of classification algorithms
Microarray
Classification
Cancer
Microarray
Classification
Cancer
14.4 years ago
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Sample size estimation for independent validation set
Microarray
Classification
PROcess
Microarray
Classification
PROcess
updated 14.4 years ago by
qinghua xu
▴ 110 • written 14.4 years ago by
qinghua.XU@as.biomerieux.com
▴ 10
0
votes
1
reply
1.1k
views
classification method applied to microarrays (CMA package)
Classification
CMA
Classification
CMA
updated 14.5 years ago by
Stephen Henderson
▴ 10 • written 14.5 years ago by
Juan C Oliveros Collazos
▴ 190
0
votes
0
replies
1.3k
views
Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing
Genetics
Classification
Cancer
PROcess
Sequencing
Genetics
Classification
14.5 years ago
Reek, J.
▴ 10
0
votes
2
replies
1.1k
views
OT: van 't Veer (2002) classifier
Classification
Cancer
Breast
Classification
Cancer
Breast
updated 14.7 years ago by
Francois Pepin
★ 1.3k • written 14.7 years ago by
Gad Abraham
▴ 110
0
votes
0
replies
1.5k
views
CMA package: variable selection with limma
Microarray
Classification
Regression
limma
CMA
Microarray
Classification
Regression
limma
15.1 years ago
Renaud Gaujoux
▴ 170
0
votes
0
replies
1.5k
views
Correcting for covariate (very unbalanced design)
Microarray
Classification
limma
Microarray
Classification
limma
15.4 years ago
Renaud Gaujoux
▴ 170
0
votes
3
replies
1.5k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
3
replies
993
views
Generating random gene lists: does sample/resample generate random sets
Classification
Classification
15.6 years ago
Scott Ochsner
▴ 300
0
votes
2
replies
1.7k
views
Generating random gene lists: does sample/resample generate random sets
Classification
Classification
updated 15.6 years ago by
Thomas Hampton
▴ 750 • written 15.6 years ago by
Scott Ochsner
▴ 300
0
votes
0
replies
1.1k
views
Cluster and classification research ggrad students
Classification
Classification
15.7 years ago
William Shannon
▴ 280
50 results • Page
1 of 1
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark
by
jacques.imbert
• 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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