Showing : classification • reset
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.7 years ago • updated 3.4 years ago whduke • 0
3
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2
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Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 5.5 years ago by 41k • written 5.5 years ago by • 0
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5
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CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
5.7 years ago Jenny.chien • 0
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779
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NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.8 years ago Seymoo • 0
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1
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1.1k
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Classification with large number of qualitative variables
R classification qualitative variables high dimensionnal
updated 7.4 years ago by ▴ 130 • written 7.4 years ago by • 0
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975
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Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
7.9 years ago svlachavas ▴ 830
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1
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Questions about the correct implementation of the function plotRLDF from R package limma regarding classification of a microarray dataset
limma microarray plotRLDF classification
7.9 years ago svlachavas ▴ 830
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721
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Package for classifying two classes of sequences using hidden markov models?
hmm classification
8.0 years ago vinod.acear ▴ 50
1
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1
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2.2k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 10
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2
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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 830
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1.4k
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Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
9.0 years ago svlachavas ▴ 830
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2
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1.1k
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Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification Classification
updated 9.7 years ago by 21k • written 9.7 years ago by ★ 13k
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3
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1.5k
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Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification CMA Classification CMA
updated 9.7 years ago by 21k • written 9.7 years ago by ★ 13k
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1.1k
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Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation Classification Clustering Annotation Classification Clustering
9.9 years ago Wolfgang Huber ★ 13k
0
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3
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1.5k
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MLSeq Mathematical Concepts
Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ★ 1.5k
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1
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1.5k
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Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
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1.1k
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CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing Annotation Classification Clustering Sequencing Annotation Classification
10.1 years ago Wolfgang Huber ★ 13k
0
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0
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1.4k
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CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
11.0 years ago CAMDA 2013 ▴ 30
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1.1k
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CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
11.1 years ago CAMDA 2013 ▴ 30
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5
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3.1k
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DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 11.1 years ago by 41k • written 11.1 years ago by ★ 13k
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Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
11.1 years ago Matthew Thornton ▴ 350
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3.0k
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Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 300
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3
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2.8k
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PAMR- Package: Workflow and/or other methods
Classification Classification
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 70
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0
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1.5k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
11.5 years ago McGee, Monnie ▴ 300
0
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947
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Questions regarding MCRestimate package
Classification MCRestimate Classification MCRestimate
11.7 years ago Guest User ★ 13k
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1.4k
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Overlapping ROC plots
Classification ROC graph Classification ROC graph
11.8 years ago Yadav Sapkota ▴ 130
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735
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Question about MCRestimate
Classification Classification
11.9 years ago ZHENG FU ▴ 10
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5
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4.4k
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probability of a point membership to a certain cluster
Classification Classification
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 60
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'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray Classification limma CMA Microarray Classification limma CMA
13.2 years ago Santosh Patnaik ▴ 30
0
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4
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RandomForest, supervised machine learning and uncertainty
GO Classification GO Classification
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 370
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875
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Fwd: question regarding to MLInterface
Network Classification Network Classification
13.4 years ago Vincent J. Carey, Jr. 6.7k
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17k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.9 years ago David Lyon ▴ 340
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1.5k
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R Course 28-29 March in Heidelberg (EMBL)
Classification Classification
14.2 years ago Wolfgang Huber ★ 13k
0
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3
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980
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
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1.5k
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Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 14.2 years ago by ★ 13k • written 14.2 years ago by 21k
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1.1k
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
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1.2k
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compare function in CMA package
Classification CMA Classification CMA
14.3 years ago Javier Pérez Florido ▴ 840
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1.2k
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Statistical approach to compare differentiall expressed gene lists
Microarray Classification Microarray Classification
14.3 years ago qinghua xu ▴ 110
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1.0k
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回复： 回复： : Patent issues of classification algorithms
Microarray Classification Microarray Classification
14.3 years ago qinghua xu ▴ 110
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716
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转发： 回复： Patent issues of classification algorithms
Microarray Classification Cancer Microarray Classification Cancer
14.4 years ago Martin Morgan 25k
0
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1
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1.1k
views
Sample size estimation for independent validation set
Microarray Classification PROcess Microarray Classification PROcess
updated 14.4 years ago by ▴ 110 • written 14.4 years ago by ▴ 10
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1
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1.1k
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classification method applied to microarrays (CMA package)
Classification CMA Classification CMA
updated 14.5 years ago by ▴ 10 • written 14.5 years ago by ▴ 190
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0
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1.3k
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Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
14.5 years ago Reek, J. ▴ 10
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2
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1.1k
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OT: van 't Veer (2002) classifier
Classification Cancer Breast Classification Cancer Breast
updated 14.7 years ago by ★ 1.3k • written 14.7 years ago by ▴ 110
0
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0
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1.5k
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CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
15.1 years ago Renaud Gaujoux ▴ 170
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0
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1.5k
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Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
15.4 years ago Renaud Gaujoux ▴ 170
0
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3
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1.5k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
3
replies
993
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
15.6 years ago Scott Ochsner ▴ 300
0
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2
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1.7k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 15.6 years ago by ▴ 750 • written 15.6 years ago by ▴ 300
0
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0
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1.1k
views
Cluster and classification research ggrad students
Classification Classification
15.7 years ago William Shannon ▴ 280
50 results • Page 1 of 1
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Comment: DESeq filtering specific to contrasts by Carlin95 • 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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