Bioconductor Cluster

Showing : cluster • reset

votes

replies

4.3k

views

cluster mclust limma clusplot kmeans

8.7 years ago svlachavas ▴ 830

votes

replies

3.0k

views

rnbeads gs ghostscript shared libraries cluster

8.7 years ago bmreilly • 0

votes

replies

2.0k

views

cluster mfuzz gene names

updated 8.1 years ago by Assa Yeroslaviz ★ 1.5k • written 8.1 years ago by thomas.dobrenel • 0

vote

replies

1.8k

views

SingleCellExperiment cluster identities sce

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by reinepapillon • 0

votes

1.8k

views

Network cluster WGCNA RNASeq

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by chiwut.wong • 0

votes

replies

1.5k

views

scran Clustering SingleCellExperiment annotate cluster

updated 20 months ago by James W. MacDonald 65k • written 20 months ago by achoppe ▴ 10

vote

replies

1.4k

views

cluster OrgDb clusterProfiler

written 17 months ago by Chruut • 0

vote

replies

1.4k

views

cluster

8.3 years ago niavarani ▴ 10

votes

replies

1.3k

views

cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

votes

replies

1.2k

views

biomaRt R cluster

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by camerond • 0

votes

1.2k

views

quasr parallel cluster

8.2 years ago rna seq ▴ 90

votes

replies

754

views

RNASeq Clustering cluster WGCNA

2.0 years ago chiwut.wong • 0

votes

replies

695

views

TCseq microwarray cluster counts normalization

4.7 years ago bioyas ▴ 10

votes

replies

598

views

cluster qpcr qpcrNorm clusterProfiler HTqPCR

17 months ago Javier • 0

14 results • Page 1 of 1

Recent ...

Replies

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

A: How to know if I should use voomWithQualityWeights() or not?

A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom

Answer: Log-cpm values from limma

Awards • All

Supporter to Jonathan ▴ 10