Bioconductor ClusterProfiler

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clusterProfiler GeneSetEnrichment

5 hours ago Ana • 0

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119

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Pathways clusterProfiler gseKEGG KEGG

4 days ago • updated 3 days ago julia_mcdonough • 0

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DOSE enrichplot clusterProfiler

updated 2 days ago by Guido Hooiveld ★ 3.9k • written 6 days ago by Lucie • 0

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138

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clusterProfiler ggpubr

updated 8 days ago by James W. MacDonald 65k • written 9 days ago by BCS12 • 0

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113

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clusterProfiler gseKEGG

11 days ago andromeda • 0

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171

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clusterProfiler annotation gseGO gsea OrgDb

updated 23 days ago by Guido Hooiveld ★ 3.9k • written 25 days ago by enee ▴ 10

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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 26 days ago by jandrade • 0 • written 6.3 years ago by Huang, Lei [BSD] - CRI ▴ 20

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220

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enrichplot barplot clusterProfiler

29 days ago Eva ▴ 10

8 results • Page 1 of 1

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Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30

Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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