Bioconductor ClusterProfiler

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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 29 days ago by jandrade • 0 • written 6.3 years ago by Huang, Lei [BSD] - CRI ▴ 20

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clusterProfiler GeneSetEnrichment

3 days ago Ana • 0

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149

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Pathways clusterProfiler gseKEGG KEGG

7 days ago • updated 6 days ago julia_mcdonough • 0

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clusterProfiler OrgDb biomaRt Zea_mays

updated 8 hours ago by James W. MacDonald 65k • written 1 day ago by sansan • 0

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750

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clusterProfiler RNASeq

updated 1 day ago by sredemption • 0 • written 13 months ago by ruiqi.li ▴ 10

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112

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DOSE enrichplot clusterProfiler

updated 5 days ago by Guido Hooiveld ★ 3.9k • written 9 days ago by Lucie • 0

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176

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clusterProfiler annotation gseGO gsea OrgDb

updated 26 days ago by Guido Hooiveld ★ 3.9k • written 28 days ago by enee ▴ 10

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146

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clusterProfiler ggpubr

updated 11 days ago by James W. MacDonald 65k • written 12 days ago by BCS12 • 0

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122

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clusterProfiler gseKEGG

14 days ago andromeda • 0

9 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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