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clustering
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reset
2
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"could not find function "readTSGE" in package ctsGE" Error occurs when trying to follow ctsGE package instructions.
GeneExpression
Clustering
ctsGE
7 weeks ago
jbgnielson
• 0
0
votes
3
replies
548
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
9 months ago
Alexandros
• 0
0
votes
1
reply
964
views
ConsensusClusterPlus without figures
clustering
updated 6 weeks ago by
fatmaserrt
• 0 • written 6.4 years ago by
jasonji_19950808
• 0
0
votes
2
replies
4.5k
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When is centering and scaling needed before doing hierarchical clustering?
clustering
hierarchical clustering
written 6.7 years ago by
hrishi27n
▴ 20
4 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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Robert Castelo
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shepherl
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