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clusterprofiler
•
reset
8
votes
5
replies
3.8k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler
enrichplot
4.9 years ago • updated 22 months ago
charles.foster
▴ 160
8
votes
9
replies
8.8k
views
Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_from_pkg’ is not exported by 'namespace:rvcheck'
get_fun_from_pkg
clusterProfiler
rvcheck
updated 2.3 years ago by
Samanwoy
• 0 • written 2.5 years ago by
R user Muuchi
• 0
7
votes
6
replies
2.0k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler
GSEA
fgsea
updated 15 months ago by
Gordon Smyth
50k • written 15 months ago by
nhaus
▴ 10
6
votes
11
replies
7.5k
views
Cluster profiler - KEGG analysis
clusterprofiler
3.7 years ago
sunnykevin97
• 0
6
votes
2
replies
4.2k
views
help with clusterProfiler enricher function
clusterprofiler
7.9 years ago
naholi.alejandri
▴ 50
5
votes
13
replies
4.0k
views
Getting error
enrichplot
clusterProfiler
org.Hs.eg.db
updated 2.0 years ago by
793345316
▴ 40 • written 2.0 years ago by
beslinail
• 0
4
votes
2
replies
285
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 10 weeks ago by
Guido Hooiveld
★ 3.9k • written 10 weeks ago by
sanchezsanchez
• 0
4
votes
3
replies
3.8k
views
clusterProfiler: Which GO version is used behind ?
clusterProfiler
updated 6.6 years ago by
Guido Hooiveld
★ 3.9k • written 6.6 years ago by
ZheFrench
▴ 40
4
votes
4
replies
4.1k
views
Clarifications on p-values in enrichResult objects
clusterProfiler
reactomepa
dose
updated 17 months ago by
12133067
• 0 • written 7.6 years ago by
enricoferrero
▴ 660
4
votes
6
replies
3.5k
views
Pathview unable to download pathways
clusterProfiler
KEGGgraph
clusterpr
KEGG
pathview
updated 19 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
rama
▴ 10
4
votes
1
reply
3.1k
views
GSEA using clusterprofileR
clusterprofiler
gsea
updated 6.4 years ago by
alserg
▴ 240 • written 6.4 years ago by
sup230
▴ 30
4
votes
10
replies
6.1k
views
Help with enrichKEGG function in clusterProfiler
clusterprofiler
updated 20 months ago by
Nitish Kumar Mishra
▴ 40 • written 8.1 years ago by
1992
▴ 10
4
votes
1
reply
5.8k
views
Warning message as converting gene Symbol to ENTREZID
go
clusterprofiler
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
adR
▴ 30
4
votes
4
replies
3.6k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler
GO
GO enrichment
genesetenrichment
updated 7 days ago by
jandrade
• 0 • written 6.3 years ago by
Huang, Lei [BSD] - CRI
▴ 20
4
votes
2
replies
4.1k
views
gseKEGG - no gene can be mapped (RNAseq analysis)
KEGG
clusterProfiler
updated 13 months ago by
Erqiang Hu
▴ 50 • written 13 months ago by
redafazazi
• 0
4
votes
2
replies
6.5k
views
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler
enrichGO
barplot
dotplot
5.6 years ago
MAP
• 0
4
votes
4
replies
6.4k
views
what the test method for enrichGO in clusterProfiler?
clusterProfiler
2.3 years ago
xiaofeiwang18266
▴ 50
3
votes
5
replies
1.9k
views
ReactomePA - Pathway analysis for DE porcine genes
reactomepa
clusterprofiler
6.0 years ago
thomasjenner333
• 0
3
votes
5
replies
3.0k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler
enrichplot
cnetplot
GuangchuangYu
updated 19 months ago by
Guangchuang Yu
★ 1.2k • written 22 months ago by
adR
▴ 30
3
votes
3
replies
4.4k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 9 months ago by
Guido Hooiveld
★ 3.9k • written 3.9 years ago by
t.b.kuipers
• 0
3
votes
2
replies
947
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 7 months ago by
Guido Hooiveld
★ 3.9k • written 7 months ago by
Milan
▴ 10
3
votes
2
replies
3.0k
views
gseGO input list
clusterProfiler
2.4 years ago
leakerb
• 0
3
votes
4
replies
3.8k
views
Sort clusterProfiler result
clusterProfiler
sort
updated 6.7 years ago by
sghoshucla
• 0 • written 8.6 years ago by
horcsct
▴ 10
3
votes
7
replies
4.4k
views
clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplot
clusterProfiler
7.4 years ago
Jane Merlevede
▴ 90
3
votes
2
replies
4.6k
views
Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and maxGSSize arguments
reactomepa
pathway analysis
enrichment analysis
clusterprofiler
updated 6.4 years ago by
Guangchuang Yu
★ 1.2k • written 6.4 years ago by
Miguel.Cosenza
▴ 10
3
votes
3
replies
3.2k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler
package installation
r update
updated 6.8 years ago by
tjiagoM
▴ 10 • written 6.9 years ago by
klv2706w
▴ 10
3
votes
5
replies
2.2k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview
clusterProfiler
KEGGpath
visualization
Graphviz
updated 8.4 years ago by
Luo Weijun
★ 1.6k • written 8.4 years ago by
svlachavas
▴ 830
3
votes
6
replies
1.9k
views
Result from GSEA for non-model organism not as expected
clusterProfiler
updated 4 months ago by
James W. MacDonald
65k • written 17 months ago by
Susanne
▴ 10
3
votes
11
replies
4.7k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 7 weeks ago by
Guido Hooiveld
★ 3.9k • written 3.2 years ago by
Alberto
• 0
3
votes
1
reply
5.7k
views
clusterProfiler - Non model organism
clusterprofiler
updated 6.4 years ago by
Guangchuang Yu
★ 1.2k • written 6.4 years ago by
rozanskide
▴ 10
3
votes
4
replies
3.2k
views
error in keytype performing "enrichGO" from clusterprofiler
clusterprofiler
updated 3.0 years ago by
ullrich
▴ 20 • written 5.1 years ago by
zengjia0808
▴ 10
3
votes
4
replies
1.1k
views
Annotation hub and clusterProfiler errors
clusterProfiler
Annotationhub
updated 5 months ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
BS
• 0
2
votes
4
replies
2.0k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 16 months ago by
abhisek001
• 0
2
votes
4
replies
3.0k
views
#clusterProfiler# KEGG enrichment with non-reference species
clusterprofiler
kaas
enrichKEGG
updated 6.7 years ago by
renuka.nayak
• 0 • written 7.6 years ago by
googneed
• 0
2
votes
2
replies
3.9k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler
GSEA
MSIGDB
updated 6.0 years ago by
Guangchuang Yu
★ 1.2k • written 6.0 years ago by
thomasjenner333
• 0
2
votes
1
reply
116
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 4 days ago by
Guido Hooiveld
★ 3.9k • written 6 days ago by
enee
▴ 10
2
votes
1
reply
2.0k
views
enrichKEGG
clusterProfiler
enrichKEGG
updated 23 months ago by
Guido Hooiveld
★ 3.9k • written 23 months ago by
blim4
• 0
2
votes
2
replies
3.4k
views
enrichGO from DOSE, clusterprofiler is returning empty result.
DOSE
clusterprofiler
annotation
gene ontology
gene set enrichment
updated 6.4 years ago by
Guangchuang Yu
★ 1.2k • written 6.4 years ago by
kirannbishwa01
• 0
2
votes
5
replies
3.5k
views
GO enrichment comparison with other programs
clusterprofiler
enrichment analysis
updated 7.2 years ago by
Guangchuang Yu
★ 1.2k • written 7.2 years ago by
fizer
▴ 30
2
votes
3
replies
1.7k
views
custom annotation for GO enrichment
annotationforge
GSEA
clusterprofiler
GO
annotation
6.6 years ago
cabezasdelafuented
▴ 10
2
votes
6
replies
12k
views
GSEA using clusterProfiler
GSEA
clusterProfiler
6.4 years ago
giuseppe0525
• 0
2
votes
2
replies
3.9k
views
Bgratio column in clusterProfiler enrichGO results
clusterprofiler
updated 8 months ago by
Trinh
• 0 • written 7.7 years ago by
mdtorohernando
▴ 10
2
votes
4
replies
2.5k
views
Problem with BuildGOmap() in clusterProfiler
clusterprofiler
7.3 years ago
Marcus
• 0
2
votes
4
replies
3.2k
views
I want to make a geneList for clusterProfiler analysis but I get "error in do.call( cbind lapply(x is.na )) variable names are limited to 10000 bytes"
clusterProfiler
3.3 years ago
Emilia
▴ 30
2
votes
5
replies
3.0k
views
How to use EnrichGo of Cluster Profiler
EnrichGO
clusterProfiler
written 3.2 years ago by
Carolina
• 0
2
votes
2
replies
3.1k
views
Is it possible to coerce dataframe to enrichResult class in clusterProfiler?
clusterprofiler
updated 2.3 years ago by
adriangeerre
• 0 • written 7.3 years ago by
snamjoshi87
▴ 40
2
votes
8
replies
1.6k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
bnajafpour
• 0
2
votes
10
replies
11k
views
keytype not supported in clusterprofiler when it is ensembl IDs?
clusterProfiler
enrichGO
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
kavator
▴ 30
2
votes
3
replies
1.6k
views
Gene Ontology Analysis of DE Genes
clusterProfiler
AnnotationDbi
OrgDb
goseq
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
vanbelj
▴ 20
2
votes
2
replies
4.2k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2
clusterprofiler
visualization
gseGo
7.0 years ago • updated 3.4 years ago
tcalvo
▴ 90
50 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
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It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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