Showing : cnv • reset
7
votes
9
replies
1.6k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD
2.9 years ago rtrivedi1 ▴ 10
4
votes
13
replies
3.3k
views
Gaia not returning results - load_cnv problem
gaia cnv
updated 2.6 years ago by • 0 • written 5.7 years ago by ▴ 30
4
votes
9
replies
2.3k
views
How to use cn.mops to detect CNVs from Targeted DNA Sequencing data?
cn.mops cnv targeted sequencing
updated 7.3 years ago by ▴ 540 • written 7.3 years ago by ▴ 20
3
votes
2
replies
956
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting CNV rsamtools
updated 6.1 years ago by 65k • written 6.1 years ago by ▴ 670
2
votes
2
replies
1.7k
views
Adjusting the defaults in the cn.MOPs Package
cn.mops cnv cnvtools
updated 8.8 years ago by ▴ 540 • written 8.8 years ago by • 0
2
votes
6
replies
1.7k
views
refSeqName issue in cn.MOPS
CNV cn.mops
updated 8.3 years ago by ▴ 540 • written 8.3 years ago by • 0
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 5.8 years ago by ▴ 540 • written 5.8 years ago by • 0
2
votes
2
replies
1.1k
views
list fo genes by cnv
cnv genes genomic ranges splitByOverlap
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 30
2
votes
8
replies
2.3k
views
Copy Number Variation in the cn.mops Package
cn.mops cnv cnvtools
updated 8.8 years ago by 25k • written 8.8 years ago by • 0
2
votes
2
replies
1.3k
views
detecting of CNV in WGS/WES data
CNV WGS WES
updated 6.8 years ago by ▴ 110 • written 6.8 years ago by ▴ 670
2
votes
4
replies
876
views
CopywriteR job runs out of memory
copywriter cnv
updated 4.0 years ago by ▴ 20 • written 4.0 years ago by ▴ 190
1
vote
2
replies
1.0k
views
Difficulty dowloading hg38 cnv data in tcgabiolinks
TCGAbiolinks cnv
2.5 years ago raf4 ▴ 20
1
vote
5
replies
1.6k
views
Is there any way of exporting CNV data from Affymetrix SNP 6.0 arrays from Nexus Software for OncoScan?
cnv nexus for oncoscan Affymetrix 6.0 .BGR
8.2 years ago IOM ▴ 20
1
vote
3
replies
1.4k
views
Error: could not find function "readGVF"
GVF CNV cnvGSA
updated 8.5 years ago by 65k • written 8.5 years ago by ▴ 40
1
vote
4
replies
1.6k
views
Detect CNVs in target sample
CNV cn.mops
updated 8.3 years ago by ▴ 540 • written 8.3 years ago by • 0
0
votes
3
replies
1.0k
views
exomeCopy error with compileCopyCountSegments
exomecopy cnv
6.3 years ago ramakrishnas • 0
0
votes
0
replies
824
views
visualize CNV data based on WGS
CNV
6.3 years ago Bogdan ▴ 670
0
votes
0
replies
960
views
how to analyze "Beta-score" and get CNVdata using Comunee
conumee CNV 450K
6.2 years ago bird.of.clockwise • 0
0
votes
4
replies
1.2k
views
Does Greater Depth Allow Low Purity To Work Well?
PureCN Purity Low Purity CNV
5.9 years ago twtoal ▴ 10
0
votes
0
replies
869
views
Noise Analyses of CNV Data from TCGA
tcgabiolinks tcga cnv noise pruning
5.8 years ago jrlarsen ▴ 10
0
votes
2
replies
2.5k
views
Error: vector memory exhausted (limit reached?)
tcgabiolinks tcga cnv mac os x gaia
updated 5.7 years ago by ▴ 20 • written 5.7 years ago by ▴ 30
0
votes
2
replies
1.1k
views
CNV in Normal Samples?
PureCN Germline Normal CNV
updated 5.6 years ago by ▴ 130 • written 5.6 years ago by ▴ 10
0
votes
1
reply
844
views
Error using singlecn.mops for cnv detection in WGS data
cnv cn.mops singlecn.mops
updated 2.1 years ago by • 0 • written 4.5 years ago by • 0
0
votes
0
replies
554
views
ExomeDepth package- error with "select.reference.set" function
ExomeDepth CNV
4.4 years ago Bouzid.a ▴ 20
0
votes
1
reply
761
views
CNV plot using cn.mops
cnv R plot visualization cn.mops software error
4.4 years ago ari • 0
0
votes
1
reply
786
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN CNV CNA segmentation calculateTangentNormal
updated 4.4 years ago by ▴ 130 • written 4.4 years ago by • 0
0
votes
0
replies
742
views
cn.MOPS output - mean/median of what?
cn.MOPS CNV copy number
4.2 years ago liorglic ▴ 10
0
votes
4
replies
1.4k
views
Trouble following the first 5 lines of vanillaICE tutorial?
SNP6 crlmm vanillaice vanillaice crlmm cnv
updated 8.9 years ago by • 0 • written 8.9 years ago by ▴ 20
0
votes
0
replies
461
views
cn.mops : undef chromsome using data matrix as input
CNV cn.mops undef
4.1 years ago ankita.narang86 • 0
0
votes
0
replies
566
views
Applying exomeCopy to call CNVs withouts controls considering batch effects
exomeCopy CNV WES
3.1 years ago Cheng • 0
0
votes
1
reply
717
views
How to use panelcn.mops to detect CNVs from whole genome data by getting count windows from BED file?
cn.mops panelcn.mops CNV detection CNV
4.1 years ago metzgerlukas • 0
0
votes
0
replies
1.4k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
9.3 years ago giovanni.dario • 0
0
votes
2
replies
3.3k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP CNV TCGA
9.0 years ago NS ▴ 60
0
votes
3
replies
1.5k
views
Mapping of two different regions to one gene symbol
TCGA CNV
updated 8.9 years ago by ★ 7.2k • written 8.9 years ago by ▴ 60
0
votes
0
replies
1.3k
views
'GenomeInfoDb' error in the cn.MOPS Package
cnv genomeinfodb
8.8 years ago voksdvoks • 0
0
votes
1
reply
1.1k
views
NGScopy package throwing error during installation
NGScopy installation CNV
8.7 years ago JstRoRR • 0
0
votes
1
reply
1.2k
views
exomeCopy copy number setting
cnv exomecopy
updated 8.4 years ago by 41k • written 8.4 years ago by ▴ 20
0
votes
1
reply
1.4k
views
ExomeDepth Package Error Messages
cnv exome
8.2 years ago Bio152 ▴ 150
0
votes
1
reply
1.5k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber cnvtools cnv copywriteR
updated 7.7 years ago by ▴ 170 • written 7.7 years ago by • 0
0
votes
0
replies
1.2k
views
crlmm: Does it support Illumina BeadChip platform HumanCore-24v1-0_A
cnv cnvtools crlmm
7.7 years ago enriquev • 0
0
votes
1
reply
966
views
Union of GenomicRanges problem when one range is empty
genomicranges R cnv
7.7 years ago WouterDeCoster ▴ 130
0
votes
4
replies
1.3k
views
CNV caller software
CNV
7.6 years ago Bogdan ▴ 670
0
votes
0
replies
1.2k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV minfi preprocessing dna methylation
7.1 years ago Thomas • 0
0
votes
2
replies
932
views
Filter CNVs if contain certain gene
cnv genomic ranges cnvs
6.8 years ago julrodr80 ▴ 30
0
votes
2
replies
1.4k
views
cn.MOPs issue with "Error in if (all(segMedianT == 0))"
cn.mops cnv
updated 6.3 years ago by ▴ 540 • written 6.4 years ago by ▴ 20
45 results • Page 1 of 1
Recent ...
Replies
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k
> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…
Comment: minfi::read.metharray.exp by Basti ▴ 780
This is indeed correct now !
Comment: get BM error by Fara • 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error by Mike Smith ★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Awards • All
Scholar to ATpoint ★ 4.0k
Popular Question to Gordon Smyth 50k
Popular Question to i.sudbery ▴ 40
Scholar to Michael Love 41k
Popular Question to shepherl 3.8k
Locations • All
Portugal, 1 minute ago
Belgium, 4 minutes ago
France, 4 minutes ago
Japan, 5 minutes ago
France, 8 minutes ago
Traffic: 831 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6