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cnvtools
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Calculate the CNV frequency in a dataset
genomicranges
cnvtools
6.5 years ago
julrodr80
▴ 30
0
votes
0
replies
1.2k
views
crlmm: Does it support Illumina BeadChip platform HumanCore-24v1-0_A
cnv
cnvtools
crlmm
7.7 years ago
enriquev
• 0
0
votes
1
reply
1.5k
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CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.7 years ago by
t.kuilman
▴ 170 • written 7.7 years ago by
ahinsahr11
• 0
0
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4
replies
1.9k
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Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 8.5 years ago by
Günter Klambauer
▴ 540 • written 8.5 years ago by
vakul.mohanty
▴ 10
2
votes
2
replies
1.7k
views
Adjusting the defaults in the cn.MOPs Package
cn.mops
cnv
cnvtools
updated 8.8 years ago by
Günter Klambauer
▴ 540 • written 8.8 years ago by
voksdvoks
• 0
2
votes
8
replies
2.3k
views
Copy Number Variation in the cn.mops Package
cn.mops
cnv
cnvtools
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
bioconductor
• 0
0
votes
1
reply
896
views
CNVtools installation error - not available
CNVtools
CNVtools
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
Bryan Hepworth
▴ 30
0
votes
0
replies
862
views
CNVtools/snpMatrix
CNVtools
CNVtools
14.5 years ago
Vincent Plagnol
▴ 10
8 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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