Bioconductor Co-expression

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network co-expression WGCNA

updated 19 months ago by andres.firrincieli ▴ 50 • written 19 months ago by ikumar2000 ▴ 10

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wgcna co-expression

updated 4.7 years ago by mikhael.manurung ▴ 270 • written 4.8 years ago by Lin ▴ 50

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wgcna network co-expression rnaseq

updated 5.0 years ago by Peter Langfelder ★ 3.0k • written 5.0 years ago by ag1805x ▴ 80

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WGCNA R network co-expression

updated 15 months ago by Peter Langfelder ★ 3.0k • written 5.0 years ago by avelarbio46 ▴ 10

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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