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Coc code conduct Bioconductor News

19 months ago Laurent Gatto 1.5k

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r code rna wobble

4.3 years ago fawazfebin ▴ 30

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goseq DESEQ2 RSTUDIO CODE

updated 6.6 years ago by Steve Lianoglou 13k • written 6.6 years ago by amyfm ▴ 10

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edgeR rpkm source code

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by thibault.lorin ▴ 10

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Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Thanks sir! I got it now!

Comment: Reading multiple data segments from FCS 3.0 file by SamGG ▴ 270

You should better start a question, but here is some clues. While this operation is refered as concatenate you can find it as coerce in flo…

Answer: how to make a group to apply the data to CAMERA by Gordon Smyth 45k

See the [limma User's Guide](https://www.bioconductor.org/packages/3.15/bioc/vignettes/limma/inst/doc/usersguide.pdf) for how to undertake …

Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Guido Hooiveld ★ 3.2k

To add to the extensive discussion above, you may also want to have a look at the so-called UPC algorithm, available in the [package][1] `S…

Answer: How to best visualize multi-level transcriptomics experiment data? by Gordon Smyth 45k

> One way is to extract the differentially expressed genes with p.val = 0.05 and logFC = +/-1.0 I strongly recommend using FDR < 0.05 and…

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Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array

Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

A: coefficient not estimable (limma warning)

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Scholar to Kevin Blighe 3.5k

Scholar to SamGG ▴ 270

Prophet to johnmcma ▴ 10