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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
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0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post !
```r
> sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
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ATpoint
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Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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Thank you for your comment!
1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right?
Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
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IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
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This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
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