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Showing :
coefficient
•
reset
0
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8
replies
1.8k
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DESeq2 coefficient names
resultsNames
DESeq2
coefficient
3.0 years ago
Jane
▴ 10
0
votes
3
replies
554
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
9 months ago
Alexandros
• 0
1
vote
3
replies
369
views
DEseq2 coefficient
DESeq2
coefficient
8 weeks ago • updated 5 weeks ago
JKim
• 0
3
votes
1
reply
1.1k
views
Interpretation of voom limma's intercept coefficient
limma
voom
intercept
coefficient
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
rubi
▴ 110
0
votes
1
reply
690
views
Interpretation of coefficient when using "~ grp + grp:ind.n + grp:cnd"
DESeq2
interaction
coefficient
LinearModel
RNASeq
updated 17 months ago by
Michael Love
41k • written 17 months ago by
Pedro Milanez-Almeida
▴ 10
5 results • Page
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Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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