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Showing :
coexpression
•
reset
0
votes
0
replies
824
views
Sample size on Differential Network Analysis
coexpression
WGCNA
3.1 years ago
Hanna
▴ 10
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 3.4 years ago by
Lluís Revilla Sancho
▴ 730 • written 7.6 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
1.5k
views
WGCNA gene clusters vs eigengenes
wgcna
network
coexpression
eigengenes
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
bioming
▴ 10
5
votes
3
replies
2.1k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 4.9 years ago by
Peter Langfelder
★ 3.0k • written 4.9 years ago by
mikhael.manurung
▴ 270
3
votes
7
replies
2.3k
views
novice: building gene co-expression network using RNA-Seq data
rna-seq
WGCNA
deseq
method
coexpression
updated 6.0 years ago by
Peter Langfelder
★ 3.0k • written 6.0 years ago by
7kemZmani
▴ 10
0
votes
0
replies
849
views
Principle in selecting the "appropriate" merging value for module generation
wgcna
module
mergecutheight
coexpression
6.1 years ago
tarun2
• 0
0
votes
1
reply
1.1k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 6.1 years ago by
Peter Langfelder
★ 3.0k • written 6.1 years ago by
hkarakurt
▴ 20
0
votes
0
replies
1.7k
views
How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna
modules
coexpression
networks
6.1 years ago
jol.espinoz
▴ 40
0
votes
0
replies
724
views
correlation between PCGs and the neighboring lncRNAs using LINC
coexpression
linc
LINC package
6.1 years ago
edoardobertolini
• 0
2
votes
1
reply
1.4k
views
How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna
coexpression
transcriptome
updated 6.2 years ago by
Peter Langfelder
★ 3.0k • written 6.2 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
1.3k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna
coexpression
cooccurrence
coabundance
network
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.6 years ago by
jol.espinoz
▴ 40
0
votes
2
replies
1.8k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
juls
• 0
1
vote
0
replies
1.3k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
8.0 years ago
m.fletcher
▴ 20
3
votes
2
replies
2.5k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 8.1 years ago by
Peter Langfelder
★ 3.0k • written 8.1 years ago by
Alan Smith
▴ 150
2
votes
7
replies
4.6k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 8.2 years ago by
Peter Langfelder
★ 3.0k • written 8.2 years ago by
shalinisonar13
▴ 20
0
votes
1
reply
2.7k
views
WGCNA data format?
WGCNA
coexpression
microarray
updated 8.4 years ago by
Peter Langfelder
★ 3.0k • written 8.4 years ago by
michael.ridley6
• 0
13
votes
1
reply
4.6k
views
WGCNA - Compare module preservation between class
WGCNA
coexpression
updated 8.7 years ago by
Peter Langfelder
★ 3.0k • written 8.7 years ago by
abellonau
▴ 60
4
votes
5
replies
6.1k
views
WGCNA Tutorial Selection
wgcna
coexpression
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
ctruongctruong
▴ 10
18 results • Page
1 of 1
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Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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