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Showing :
coexpression
•
reset
0
votes
0
replies
195
views
Sample size on Differential Network Analysis
coexpression
WGCNA
14 months ago
Hanna
▴ 10
15
votes
17
replies
14k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 17 months ago by
Lluís Revilla Sancho
▴ 660 • written 5.7 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
553
views
WGCNA gene clusters vs eigengenes
wgcna
network
coexpression
eigengenes
updated 2.7 years ago by
Gordon Smyth
45k • written 2.7 years ago by
bioming
▴ 10
5
votes
3
replies
929
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 3.0 years ago by
Peter Langfelder
★ 2.6k • written 3.0 years ago by
mikhael.manurung
▴ 240
3
votes
7
replies
1.3k
views
novice: building gene co-expression network using RNA-Seq data
rna-seq
WGCNA
deseq
method
coexpression
updated 4.1 years ago by
Peter Langfelder
★ 2.6k • written 4.1 years ago by
7kemZmani
▴ 10
0
votes
0
replies
426
views
Principle in selecting the "appropriate" merging value for module generation
wgcna
module
mergecutheight
coexpression
4.1 years ago
tarun2
• 0
0
votes
1
reply
561
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 4.2 years ago by
Peter Langfelder
★ 2.6k • written 4.2 years ago by
hkarakurt
▴ 20
0
votes
0
replies
984
views
How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna
modules
coexpression
networks
4.2 years ago
jol.espinoz
▴ 40
0
votes
0
replies
392
views
correlation between PCGs and the neighboring lncRNAs using LINC
coexpression
linc
LINC package
4.2 years ago
edoardobertolini
• 0
2
votes
1
reply
722
views
How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna
coexpression
transcriptome
updated 4.3 years ago by
Peter Langfelder
★ 2.6k • written 4.3 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
603
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna
coexpression
cooccurrence
coabundance
network
updated 4.6 years ago by
Lluís Revilla Sancho
▴ 660 • written 4.6 years ago by
jol.espinoz
▴ 40
0
votes
2
replies
1.2k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 5.2 years ago by
James W. MacDonald
59k • written 5.2 years ago by
juls
• 0
1
vote
0
replies
890
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
6.1 years ago
m.fletcher
▴ 20
3
votes
2
replies
1.7k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 6.1 years ago by
Peter Langfelder
★ 2.6k • written 6.1 years ago by
Alan Smith
▴ 150
1
vote
7
replies
3.1k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 6.2 years ago by
Peter Langfelder
★ 2.6k • written 6.3 years ago by
shalinisonar13
▴ 10
0
votes
1
reply
2.2k
views
WGCNA data format?
WGCNA
coexpression
microarray
updated 6.4 years ago by
Peter Langfelder
★ 2.6k • written 6.4 years ago by
michael.ridley6
• 0
5
votes
1
reply
3.3k
views
WGCNA - Compare module preservation between class
WGCNA
coexpression
updated 6.8 years ago by
Peter Langfelder
★ 2.6k • written 6.8 years ago by
abellonau
▴ 20
4
votes
5
replies
4.9k
views
WGCNA Tutorial Selection
wgcna
coexpression
updated 6.9 years ago by
Dan Tenenbaum
★ 8.2k • written 6.9 years ago by
ctruongctruong
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: featureCounts: 0% successfully assigned fragments
by
ATpoint
★ 1.2k
Lack of any details, not appreciated. Anyway, are chromosome identifiers the same between BAM and GTF?
Comment: strange results from differential methylation analysis using limma
by
nabiyogesh
▴ 10
Could you please help me how to make Methylation data input file like should I take CpG probes as rows or column? Many thanks
Comment: Ensembl plants at annotationHub?
by
karenserrano
• 0
Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen
Answer: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★ 3.2k
Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
ksong
• 0
Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…
Votes
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
Answer: Handling NA values in limma's voom design matrix
Answer: Handling NA values in limma's voom design matrix
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Gordon Smyth
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