Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
coexpression
•
reset
0
votes
0
replies
1.3k
views
Sample size on Differential Network Analysis
coexpression
WGCNA
4.9 years ago
Hanna
▴ 10
15
votes
17
replies
31k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 5.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.4 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
2.5k
views
WGCNA gene clusters vs eigengenes
wgcna
network
coexpression
eigengenes
updated 6.4 years ago by
Gordon Smyth
53k • written 6.4 years ago by
bioming
▴ 10
5
votes
3
replies
3.3k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 6.7 years ago by
Peter Langfelder
★ 3.0k • written 6.7 years ago by
mikhael.manurung
▴ 280
3
votes
7
replies
3.6k
views
novice: building gene co-expression network using RNA-Seq data
rna-seq
WGCNA
deseq
method
coexpression
updated 7.8 years ago by
Peter Langfelder
★ 3.0k • written 7.8 years ago by
7kemZmani
▴ 10
0
votes
0
replies
1.2k
views
Principle in selecting the "appropriate" merging value for module generation
wgcna
module
mergecutheight
coexpression
7.8 years ago
tarun2
• 0
0
votes
1
reply
1.6k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 7.9 years ago by
Peter Langfelder
★ 3.0k • written 7.9 years ago by
hkarakurt
▴ 20
0
votes
0
replies
2.4k
views
How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna
modules
coexpression
networks
7.9 years ago
jol.espinoz
▴ 40
0
votes
0
replies
1.1k
views
correlation between PCGs and the neighboring lncRNAs using LINC
coexpression
linc
LINC package
7.9 years ago
edoardobertolini
• 0
2
votes
1
reply
2.1k
views
How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna
coexpression
transcriptome
updated 7.9 years ago by
Peter Langfelder
★ 3.0k • written 7.9 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
1.9k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna
coexpression
cooccurrence
coabundance
network
updated 8.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.3 years ago by
jol.espinoz
▴ 40
0
votes
2
replies
2.5k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
juls
• 0
1
vote
0
replies
1.9k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
9.7 years ago
m.fletcher
▴ 20
3
votes
2
replies
3.2k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 9.8 years ago by
Peter Langfelder
★ 3.0k • written 9.8 years ago by
Alan Smith
▴ 150
2
votes
7
replies
5.8k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 9.9 years ago by
Peter Langfelder
★ 3.0k • written 10.0 years ago by
shalinisonar13
▴ 20
0
votes
1
reply
3.3k
views
WGCNA data format?
WGCNA
coexpression
microarray
updated 10.1 years ago by
Peter Langfelder
★ 3.0k • written 10.1 years ago by
michael.ridley6
• 0
13
votes
1
reply
6.2k
views
WGCNA - Compare module preservation between class
WGCNA
coexpression
updated 10.5 years ago by
Peter Langfelder
★ 3.0k • written 10.5 years ago by
abellonau
▴ 60
4
votes
5
replies
7.5k
views
WGCNA Tutorial Selection
wgcna
coexpression
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
ctruongctruong
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Hugo Gruson
• 0
Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
Comment: Are individual-mouse-based statistics possible in CellChat?
by
LillianaVolkman99
• 0
thank you very much. https://www.biostars.org/p/9617271/
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …
Answer: Bile acid analysis with limpa
by
Gordon Smyth
53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards
• All
Popular Question
to
ATpoint
★ 5.0k
Popular Question
to
Martin Morgan
25k
Teacher
to
Michael Love
43k
Popular Question
to
A
• 0
Popular Question
to
Lluís Revilla Sancho
▴ 760
Locations
• All
Germany,
3 minutes ago
Barcelona, Spain,
3 minutes ago
United States,
24 minutes ago
Australia,
35 minutes ago
United States,
41 minutes ago
Traffic: 1356 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6