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colData
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4
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8
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What is colData? How do I make one?
deseq2
coldata
updated 5.4 years ago by
swbarnes2
★ 1.3k • written 5.4 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.0k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 5.5 years ago by
Valerie Obenchain
★ 6.8k • written 5.5 years ago by
lvclark
▴ 10
0
votes
3
replies
1.4k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 6.3 years ago by
Levi Waldron
★ 1.1k • written 6.3 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
2
replies
501
views
Heat Map
ColData
pheatmap
DESeq2
written 9 months ago by
dania.khalid
• 0
2
votes
2
replies
1.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
ariel
▴ 20
0
votes
1
reply
926
views
Rename colData column
SingleCellExperiment
colData
rename
updated 13 months ago by
Basti
▴ 750 • written 13 months ago by
achoppe
▴ 10
0
votes
6
replies
3.5k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
t.kuilman
▴ 170
1
vote
0
replies
553
views
Understanding ColData in BiSeq
BiSeq
Coldata
3.8 years ago
akhaira
• 0
8 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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