Bioconductor ColData

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539

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ColData pheatmap DESeq2

written 10 months ago by dania.khalid • 0

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997

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SingleCellExperiment colData rename

updated 14 months ago by Basti ▴ 780 • written 14 months ago by achoppe ▴ 10

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570

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BiSeq Coldata

3.9 years ago akhaira • 0

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1.4k

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deseq2 levels factor colData

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by ariel ▴ 20

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42k

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deseq2 coldata

updated 5.4 years ago by swbarnes2 ★ 1.3k • written 5.4 years ago by mjrarcher ▴ 10

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3.1k

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variantannotation coldata

updated 5.6 years ago by Valerie Obenchain ★ 6.8k • written 5.6 years ago by lvclark ▴ 10

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3.5k

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deseq2 coldata NA

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by t.kuilman ▴ 170

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1.4k

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multiassayexperiment colData

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.4 years ago by Lluís Revilla Sancho ▴ 730

8 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k