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colData
•
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0
votes
2
replies
501
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Heat Map
ColData
pheatmap
DESeq2
written 9 months ago by
dania.khalid
• 0
0
votes
1
reply
925
views
Rename colData column
SingleCellExperiment
colData
rename
updated 13 months ago by
Basti
▴ 750 • written 13 months ago by
achoppe
▴ 10
1
vote
0
replies
553
views
Understanding ColData in BiSeq
BiSeq
Coldata
3.8 years ago
akhaira
• 0
2
votes
2
replies
1.4k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
ariel
▴ 20
4
votes
8
replies
41k
views
What is colData? How do I make one?
deseq2
coldata
updated 5.4 years ago by
swbarnes2
★ 1.3k • written 5.4 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.0k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 5.5 years ago by
Valerie Obenchain
★ 6.8k • written 5.5 years ago by
lvclark
▴ 10
0
votes
6
replies
3.5k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.4k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 6.3 years ago by
Levi Waldron
★ 1.1k • written 6.3 years ago by
Lluís Revilla Sancho
▴ 730
8 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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