Bioconductor Colon

Showing : colon • reset

votes

1.1k

views

colon rstudio golubesets

updated 8.1 years ago by James W. MacDonald 65k • written 8.1 years ago by shramanathakur • 0

votes

replies

1.5k

views

Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma

10.9 years ago Ed Siefker ▴ 230

votes

replies

3.8k

views

Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV

11.5 years ago SSc Array Core ▴ 10

votes

replies

1.4k

views

Sequencing Alignment Cancer Colon bsseq Sequencing Alignment Cancer Colon bsseq

11.7 years ago Kasper Daniel Hansen ★ 6.5k

votes

replies

1.2k

views

Microarray GO Cancer Colon affy limma Microarray GO Cancer Colon affy limma

12.7 years ago James W. MacDonald 65k

votes

1.7k

views

Microarray Cancer Colon limma Microarray Cancer Colon limma

updated 12.7 years ago by James W. MacDonald 65k • written 12.7 years ago by Manuela Di Russo ▴ 70

votes

604

views

Colon Colon

updated 14.2 years ago by James W. MacDonald 65k • written 14.2 years ago by Alberto Goldoni ▴ 420

votes

replies

872

views

SNP Cancer Colon SNP Cancer Colon

14.8 years ago Dmitri Mouradov ▴ 20

votes

replies

1.2k

views

SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

14.9 years ago Dmitri Mouradov ▴ 20

votes

replies

1.6k

views

Normalization Cancer Colon Normalization Cancer Colon

updated 17.0 years ago by Jeremy Davis-Turak ▴ 50 • written 17.0 years ago by Jianping Jin ▴ 890

votes

replies

1.3k

views

Microarray Colon limma Microarray Colon limma

updated 19.6 years ago by Gordon Smyth 50k • written 19.6 years ago by Matt McCall ▴ 50

11 results • Page 1 of 1

Recent ...

Replies

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Awards • All

Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k